Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1112 ATGGTCTTTGTTTTGATCTTCTTCTCTCTCACTTGCTCTTTCTCACCTTCCTATGGATATGACTCGTTGGACCCTTATGCTAACATTACCATCACATGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTGAGGGTTTCATTGTACAATTTCCAACTGTTTCGCCATGTGGAGTTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAAGTGAGGAGGTTATATGGAGTATGTGGGGAGCAGAGGCTACTCAGCAAGGAAATTGCTCCATATACATAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCTAATTGTTGTAAAGGAGGTGTGCTATCTTCCATGAGACAAGAGTCTGCCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTTCCGGAAAGGATGTAGATAACAAAATGCCTGAAAATTTCACACTGGGGCTTCCTGGATATACTTGTAGTGAACCATTTCAAGTCCCTCCGACCAAGTTCAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGTGTTTACTCCCAATTTCAATCATCACCGACACCAAGGTGCTGCGTTTCATTGTCATCTTTCTACAACAGCACCATTGTCCCTTGCCCTCAGTGCAGCTGTGGTTGCCAAGGGCTAAAGGGAACAAAATGTGTCAAGTCAGGTGAAACTCCTTCAGTGTTGCAACTTCCACATGAACATTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCACGTGAAACAGAGTTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAACTTTGCTAAGAATTACTCTGAATGGAACTTAGTAGTGATGCATCCCAATTTGCGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGACACAGGGATGTTTTGGGGGATTCACTTCTACAATGACTTGTTACTCACATCAGGAGAGAGAGGGAATGTCCAAACAGAAATTCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCATTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAATCTCACAGGGCCATGGCAGCCTCATTCATAGCTTTCTTCTTCTTGTTTCTCTCTGTATCATTATAA 1299 43.11 MVFVLIFFSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDVRVSLYNFQLFRHVELPGWKLGWSWKSEEVIWSMWGAEATQQGNCSIYIGRELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQESANYGAAFQMNVGKSSGKDVDNKMPENFTLGLPGYTCSEPFQVPPTKFSKDGGRRWTQVLETWNVTCVYSQFQSSPTPRCCVSLSSFYNSTIVPCPQCSCGCQGLKGTKCVKSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSEWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTEILLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKSHRAMAASFIAFFFLFLSVSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10074567 10077990 + CcPI632755_05g011120.1 Cco05g1112 178740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1112 432 PIRSF COBRA 1 432 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cco05g1112 432 PANTHER PROTEIN COBRA 5 427 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cco05g1112 432 Pfam COBRA-like protein 43 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1112 Cco-Chr5:10074567 Cco06g1748 Cco-Chr6:27966798 3.90E-138 dispersed
Cco05g1112 Cco-Chr5:10074567 Cco07g1675 Cco-Chr7:30751789 8.10E-136 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1112 - - - 0.0