Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1114 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCTTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTTTGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTCAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAGTCGCTGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACAAGACGGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGATGTTTATTGCTTTTCCTGCTTATTTTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1329 46.43 MGKGPFSFRRSSSRRRPKKVVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQFELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLVAGLFGMNIPCTLYKTDGVFGYFVGGTSAGCLLLFLLIFGYAKWKKLLGS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10098799 10104818 - CcPI632755_05g011140.1 Cco05g1114 178742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1114 442 Gene3D Magnesium transport protein CorA, transmembrane region 145 373 - -
Cco05g1114 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 62 439 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cco05g1114 442 Gene3D - 59 142 - -
Cco05g1114 442 CDD Mrs2_Mfm1p-like 71 439 IPR039204 -
Cco05g1114 442 MobiDBLite consensus disorder prediction 1 55 - -
Cco05g1114 442 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 378 429 IPR045863 -
Cco05g1114 442 FunFam Magnesium transporter MRS2-1 59 142 - -
Cco05g1114 442 Coils Coil 240 274 - -
Cco05g1114 442 Pfam Magnesium transporter MRS2-like 84 286 - -
Cco05g1114 442 Pfam CorA-like Mg2+ transporter protein 328 433 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0023 Cco-Chr2:276226 Cco05g1114 Cco-Chr5:10098799 2.00E-214 dispersed
Cco05g1114 Cco-Chr5:10098799 Cco06g0676 Cco-Chr6:7546172 2.10E-86 dispersed
Cco05g1114 Cco-Chr5:10098799 Cco07g0064 Cco-Chr7:611745 9.60E-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1114 K16075 - csv:101203496 726.472