Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1114 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGTGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCTTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTTTGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTCAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAGTCGCTGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACAAGACGGATGGGGTGTTCGGGTACTTTGTCGGAGGTACTTCAGCAGGATGTTTATTGCTTTTCCTGCTTATTTTTGGGTATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1329 46.43 MGKGPFSFRRSSSRRRPKKVVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQFELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLVAGLFGMNIPCTLYKTDGVFGYFVGGTSAGCLLLFLLIFGYAKWKKLLGS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10098799 10104818 - CcPI632755_05g011140.1 Cco05g1114 178742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1114 442 Gene3D Magnesium transport protein CorA, transmembrane region 145 373 - -
Cco05g1114 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 62 439 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cco05g1114 442 Gene3D - 59 142 - -
Cco05g1114 442 CDD Mrs2_Mfm1p-like 71 439 IPR039204 -
Cco05g1114 442 MobiDBLite consensus disorder prediction 1 55 - -
Cco05g1114 442 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 378 429 IPR045863 -
Cco05g1114 442 FunFam Magnesium transporter MRS2-1 59 142 - -
Cco05g1114 442 Coils Coil 240 274 - -
Cco05g1114 442 Pfam Magnesium transporter MRS2-like 84 286 - -
Cco05g1114 442 Pfam CorA-like Mg2+ transporter protein 328 433 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1114 K16075 - - csv:101203496 726.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0023 Cco-Chr2:276226 Cco05g1114 Cco-Chr5:10098799 2.00E-214 dispersed
Cco05g1114 Cco-Chr5:10098799 Cco06g0676 Cco-Chr6:7546172 2.10E-86 dispersed
Cco05g1114 Cco-Chr5:10098799 Cco07g0064 Cco-Chr7:611745 9.60E-84 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1274 . 1 447 MRS2 Gene Family AT1G16010 85.0 1.2e-206 716.1
Cco08g1198 . 88 462 MRS2 Gene Family AT1G16010 52.4 2.8e-107 386.0
Cco06g0676 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.3e-158 556.2
Cco07g0064 . 796 1167 MRS2 Gene Family AT5G64560 68.4 9.0e-131 463.8
Cco02g0767 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Cco05g1114 . 59 442 MRS2 Gene Family AT3G58970 70.3 1.0e-141 500.4
Cco02g0023 . 59 442 MRS2 Gene Family AT3G58970 70.1 4.9e-141 498.0
Cco08g1198 . 88 462 MRS2 Gene Family AT2G03620 68.4 4.2e-137 485.0
Cco10g1274 . 13 447 MRS2 Gene Family AT2G03620 53.0 3.6e-112 402.1
Cco05g1114 . 59 441 MRS2 Gene Family AT4G28580 50.7 8.0e-93 337.8
Cco06g0676 . 1 327 MRS2 Gene Family AT5G09690 76.1 3.9e-127 451.4
Cco07g0064 . 796 1129 MRS2 Gene Family AT5G09690 63.0 1.0e-106 383.6
Cco10g1274 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Cco06g0676 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.7e-89 326.2
Cco07g0064 . 831 1089 MRS2 Gene Family AT5G09720 60.5 2.7e-74 275.8
Cco10g1274 . 1 447 MRS2 Gene Family AT1G80900 83.0 2.1e-200 695.3
Cco08g1198 . 80 462 MRS2 Gene Family AT1G80900 53.9 4.0e-106 382.1
Cco01g1551 . 16 455 MRS2 Gene Family AT5G22830 68.6 1.5e-156 549.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47