Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1116 ATGAAGTCGATCAAATCCTCCGGCTTAAACATGGAGCAACCCATTCGTGGATCCTTTGATGAAGGCCAATACAGAAGCCGAAGCATTCACTCCGACGCCGCTAGAATCGATTTGGATAAGAAGGTGAAGAAGGTTCGAGGAAGAGGCAAAACGAAGAACTCGTGGAAACAAGATAGCGAGAAGAGTTTTAAAGAAAAACGCACAATCGAGAGTCTATTTGAGAAGGATTTTGTGGAGAGGCTTCGGAACAGAATCCAAGTCCAGACAAGATTTCATTTCGAAGATACTGAAAAGTACTTGCCCAGTGATGAATTGGGAACAATTATTCGAAGTGACCAAGCAAGGATGGCGGAGACAATATGGGAAGAAAGCGTAATTCGCCTGGCGCCGCTGTATAGAGCGGCGCTAATGGGCGAATGGGAGATAGCAGAAGCCATTTTCAAGCAAGATTCTAGAGCAATCACGTCGGAGATCAGCCTCTTGAACGAGACTGCTCTCCATGTAGCGGTCGGCACAGGCGGCAATTTGGGATTTGTTGAGAAGCTGGTGAGCTTAATGTGGAAGCGATCGCTGCCGCTTACACAGGAGGATTTATATGGGAATACTGCGCTTGCTGTTGCCGCCATTGTCGGAAATGTGAAAGCTGCAGAAATCTTGGTCGGGAAAGATGAGATGTTGCCGGCGATGAGAAACCGGGTGAATTACTCGTCGTTGCATCTGGCGGCGAAATATGGGCACAGAGATATGGTTTTGTATCTTCTAGGCGTAACAAAGGACGAAGGGATATTCACCGGTCAATCTGGTGCTAGGCTTCTCAATCTTCTCATTTCATTTGATATCTATGATGTAGCTCTTGATATATTAAACCAACAGCCGAAGTTGGCGGTGGAACAAGATCAATACGGATTCACAGCTCTACAAATGTTGGCTGAAAAACCAGATGTGTTTGAGAGTGGAACAACTCAGCTTGCGCGTTGCCGACGCATCCTTCATCCTCGCTCCCGTGTTGCTGTGGAAGTCTTTGATGCTTCTGATCATCTGCCTATGCAACAGAGTGATATCGAAAGTCCTCCTGAAATCTCAAACAATGCAGGAGCGTTGATGAAGAATGTTCATAGGAAAAAGCATAATAAGAAGCATGAGGAAGCATGTAAGTTGGCAAAACGGTTATGCGAAGAAGCAGTAAACGTGGGGGGGGAAAAGTGCGCCAAATTGTTTTCAACTTCAATACTTTCAGCTGCAAGAATGGGGAGTGTTGAAGTTGCCATAGCAATTGTAAGAGTTTATCCTTATTCAATTTGGTTCCGCGATAGCCGTGAATGCAATATTTTTCAGCTTGCTGTTCTTCATCGTCAACACAAGATTTATAATCTTATATATCAAATGACTTCACACAAGTATTTTGCAGCAGCTTTTCTTGACAATAATGATAACAACATGTTGCATTTAGCTGGTGAGCTTGTTCCATCTCATTCAATCTCTGGTGCAGCTTTGCAATTGCAACGAGAATTGCAATGGTTTAAGGAAGTCGAAAGATTAGTGCTACCATCTTACAAAAGCATGACAAACAAAGATAACAAAACACCAAGAATGGTATTTAGTGAAGAACATGAAGAGCTAGTTCACCAAGGTGAAAAATGGATGAAGAACACTGCTTCATCGTACACCGTTGTTGCGGCGCTCATTGCGACGGTTGCATTTGCAGCAATTTTCACTGTACCTGGTGGCAACGACAATGATCAAGGCATCCCTATTCTCATTAACCACAAATTCTTCATGGTTTTTGTAGCAGCAGATGCATTAGCATTAATCACTTCATCTGCTTCAGTAATAATGTTTTTAGGAATACTCACTTCGCGCTACGCAGAAGACGATTTTCTCAAGGCATTACCTTCGAGATTGATTATCGGTCTCGTCTCGTTGTTCATCTCTATATTATCCATGGTAGCAGCCTTCAGTGCATCCCTTTGCCTAGTTCTTGTTCATCAACTGAGATGGGTGTGGGCTCCAATGATAGTATTTGCCTTGGTTCCTGTTATCTTATTTGCCATGTTGCAATTTCCACTTTTGGTGCAAATGACATCTTCCACATATGGGCCTAGCATTTTTGGTTTGCAAAGTACAATTCCAAGGAAGACTTTGGTGATGGACTCTCTCCTGGTTCCAAACTATATGATCTGTGTTAGAATAATTTTGCACATAGTTGAGGATCTTTGTAGATGGTTCCCTCCTCTCATTGGTTCCTTTCAAGGCGAATGCAAATGTGATTGTCGTTATGGTAAACCTATTGAACTTACTAAGAATATAGCTCTTCAGGAAGATATTTCTAGAATCCTCGAAGTTGAACCTATTCCCCACTTTTCGGCTCTCATTATCTCGCCGCCGCTCCTTCTCTTTGGTTGCTCTAATTCGAAGTTTGCGAAAGAGCTTCAGAGTTTTTCCTTTACAATCCATTCGATTTTGCTCCTGATTTTAGATCCGTGTTCTGTGATCGACGTTGAGAGAGAGAATGGCTTCTCGTTTCTGGACCCAGGTATTGCGTTCAGTCTAAACGGTGGTGGCAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGACGACGTACAGGTTGATCCTGGCTCCCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGCGAAGATTCTGAGGATAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTTAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTAAATGAAGCCATGGCCAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATTCTAAGGCCTTAAATTCAATGAAACAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTGCCAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAGGCTGATGAGCTGGAGGAGGAGGAGGAGGAGGATGATGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCAGATTCAGAGCCAGAGCCAGATGTAGATGAAGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAGAAGAAGAGCAAAAAAAATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAGAACATGCTTTCTATAATTGACATTCTTGTGCAGAATTCCAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAAAGCCAGAAGCCAGCCGACTATAAGGGAACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGACCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGCATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCGAAAGTTGCCCTGAGGCGTGTTGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGTGGAGATGCAAGTGAGGAGGCTAAAGTGGTTGAAGAGAGCAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTTATCTACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTATGTGATATTTATCACCATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACATTTGGACATTTCAACGCAGATCCTTTTTAATAGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTGGCACAAGGTGTCTCACAAAGCCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCATGATGCCAAGCGCAAGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACGTTTACGGGTCCTCCTGAGAACGTTAGAGATCATGTAATGGCTGCTACCCGGGCCCTTCGCAAGGGTGATTTCCAGAAGGCTTTTGATGTCCTTGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGCGATGAAGTGCTGGAAATGGTAAAAGGGAAAATCAAGGAGGAGGCTTTGAGGACTTACCTTCTCACATACTCTTTCTCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTCGACCTTGCAGAGGGTCAAACACACAGCATTGTGAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGCGGGTGTGTCATCTTCCACGATGTTACACACACCCGATTACAAGGCCTGGCATTCCAACTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAACGAGAGAGCAGTTGAGGCAAGAATAGGAGGAGGATTAGATTTACCAATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGGGCTGTAGGAGGGAGTAGCAGGTGGCCAGATAACATGTCTTATAATCAAGGAAGGCATGGCGGTCCTAGTTCGCGTGCAGGATATAGCAGCAGTGGGCGAGGCCAAGGTGGGGCTGGTGGATATTCTAGAGACCGGATGGGTCAGTCTCGAGGAGGCAATGCAGGATATCAAAGCACTCGTTATCAAGACGCTGCATATGGATCAGGGAGGACTGCTTATCAGTCAGGTTCTGCCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGTGTTCATGCTTAA 5352 43.98 MKSIKSSGLNMEQPIRGSFDEGQYRSRSIHSDAARIDLDKKVKKVRGRGKTKNSWKQDSEKSFKEKRTIESLFEKDFVERLRNRIQVQTRFHFEDTEKYLPSDELGTIIRSDQARMAETIWEESVIRLAPLYRAALMGEWEIAEAIFKQDSRAITSEISLLNETALHVAVGTGGNLGFVEKLVSLMWKRSLPLTQEDLYGNTALAVAAIVGNVKAAEILVGKDEMLPAMRNRVNYSSLHLAAKYGHRDMVLYLLGVTKDEGIFTGQSGARLLNLLISFDIYDVALDILNQQPKLAVEQDQYGFTALQMLAEKPDVFESGTTQLARCRRILHPRSRVAVEVFDASDHLPMQQSDIESPPEISNNAGALMKNVHRKKHNKKHEEACKLAKRLCEEAVNVGGEKCAKLFSTSILSAARMGSVEVAIAIVRVYPYSIWFRDSRECNIFQLAVLHRQHKIYNLIYQMTSHKYFAAAFLDNNDNNMLHLAGELVPSHSISGAALQLQRELQWFKEVERLVLPSYKSMTNKDNKTPRMVFSEEHEELVHQGEKWMKNTASSYTVVAALIATVAFAAIFTVPGGNDNDQGIPILINHKFFMVFVAADALALITSSASVIMFLGILTSRYAEDDFLKALPSRLIIGLVSLFISILSMVAAFSASLCLVLVHQLRWVWAPMIVFALVPVILFAMLQFPLLVQMTSSTYGPSIFGLQSTIPRKTLVMDSLLVPNYMICVRIILHIVEDLCRWFPPLIGSFQGECKCDCRYGKPIELTKNIALQEDISRILEVEPIPHFSALIISPPLLLFGCSNSKFAKELQSFSFTIHSILLLILDPCSVIDVERENGFSFLDPGIAFSLNGGGSGSDSEAEESDYGEELDDVQVDPGSQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVIAKYRENPEIEEEKADELEEEEEEDDESEYEDDPSKIMSDSEPEPDVDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQAYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVLASLDVWKLLRNRDEVLEMVKGKIKEEALRTYLLTYSFSYDSLSSDQLTQMFDLAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGGLDLPMRRRDNQEYAAGGAVGGSSRWPDNMSYNQGRHGGPSSRAGYSSSGRGQGGAGGYSRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSARGSQMDASARMVSLNKGVHA 1783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10126598 10143943 - CcPI632755_05g011160.1 Cco05g1116 178744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1116 1783 MobiDBLite consensus disorder prediction 1 26 - -
Cco05g1116 1783 MobiDBLite consensus disorder prediction 982 1078 - -
Cco05g1116 1783 MobiDBLite consensus disorder prediction 892 911 - -
Cco05g1116 1783 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 856 1737 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)|GO:0031369(PANTHER)
Cco05g1116 1783 Pfam Domain of unknown function 545 659 IPR026961 -
Cco05g1116 1783 MobiDBLite consensus disorder prediction 877 891 - -
Cco05g1116 1783 SUPERFAMILY Winged helix DNA-binding domain 1560 1635 IPR036390 -
Cco05g1116 1783 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 847 1712 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cco05g1116 1783 SMART ANK_2a 233 262 IPR002110 GO:0005515(InterPro)
Cco05g1116 1783 SMART ANK_2a 161 191 IPR002110 GO:0005515(InterPro)
Cco05g1116 1783 SMART ANK_2a 199 228 IPR002110 GO:0005515(InterPro)
Cco05g1116 1783 MobiDBLite consensus disorder prediction 1693 1716 - -
Cco05g1116 1783 MobiDBLite consensus disorder prediction 1736 1773 - -
Cco05g1116 1783 SUPERFAMILY Ankyrin repeat 130 462 IPR036770 -
Cco05g1116 1783 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1565 1653 IPR000717 -
Cco05g1116 1783 Pfam PCI domain 1561 1633 IPR000717 -
Cco05g1116 1783 MobiDBLite consensus disorder prediction 852 911 - -
Cco05g1116 1783 ProSiteProfiles PCI domain profile. 1464 1636 IPR000717 -
Cco05g1116 1783 Coils Coil 990 1031 - -
Cco05g1116 1783 Pfam Ankyrin repeats (3 copies) 166 254 IPR002110 GO:0005515(InterPro)
Cco05g1116 1783 MobiDBLite consensus disorder prediction 1001 1021 - -
Cco05g1116 1783 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 891 1496 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cco05g1116 1783 MobiDBLite consensus disorder prediction 1022 1043 - -
Cco05g1116 1783 Gene3D - 110 488 IPR036770 -
Cco05g1116 1783 MobiDBLite consensus disorder prediction 1683 1783 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0441 Cco-Chr3:4738196 Cco05g1116 Cco-Chr5:10126598 2.10E-56 dispersed
Cco03g0449 Cco-Chr3:4808676 Cco05g1116 Cco-Chr5:10126598 2.90E-76 dispersed
Cco05g1116 Cco-Chr5:10126598 Cco07g0049 Cco-Chr7:452223 9.10E-16 dispersed
Cco05g1116 Cco-Chr5:10126598 Cco05g1117 Cco-Chr5:10154872 5.40E-226 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1116 K03252 - csv:101203990 1670.21