Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1126 | ATGGAGATGAATCTCCCCAACTACTGGCCGGCCGAGAAAAATGGCGAAGAGAAGAAGAAGGACAATCAGAAGCAAGGAAATGAAGATGACGACGACAACGATAGCGATAGCGATAGCGACATGCCGTCATCGTTGAGCCTTAGAGAGCTTTCTAAGGTTATACTTCCACCTTTGGGAGTTTCAAGCTTTACTGATGACAATAAAGTCCATTCCAATAGATGGATCATCTCCCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTATGGACGCAATTCCCAAGCGCCAATTATTAATTGCAGACAGTATTGTCGATCTTTTCTTCGCCATTGATATCTTCTTCACCTTCTTCGTTGCTTACATTGATCATCACACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTAGCATCAACAATCCCATTTGAGACACTGGCCTATCTGTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCATTGTGCCGGATGCCTCTACTACTTGTTGGCTGATCGATATCCACATGAAGGGAAGACCTGGATCGCAACCTTATTTCCAAATTTCAAAGAGATTAGCCTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGCGGAGATGATCTTTATCATTTTCTACATGCTCTTCAATCTCGGGCTGACTGCTTACTTGATTGGTAACATGACAAACTTAGTTGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATCGAAATGGCTTCAAATTTTGTTAACCGAAATCGCCTGCCTTCGAGGGTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAACAGCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATCTGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGCGTCTCAAAGGAAACACTTGTGGTGCTGGTAGCGAAGATGAAAGCTGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAACGACACTCCTGATGAAGTTTATATCATCGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGGACGTTACAGTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTACTACAAGAAGCTATGCATATCAAACAAGCAGACAGTATGATCATTGTCAAGAACTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGGTGCCGACGTTGATTGAAGAAAAAGATCAAAGTTTCAATTGGAAACACTCCATTGAATTAGATTTTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTGATCAGACTGCCACATTCAATGGAGGAGCTCAAAAAAATTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGCTTTTTTTTTCATAG | 1905 | 42.31 | MEMNLPNYWPAEKNGEEKKKDNQKQGNEDDDDNDSDSDSDMPSSLSLRELSKVILPPLGVSSFTDDNKVHSNRWIISPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFMDAIPKRQLLIADSIVDLFFAIDIFFTFFVAYIDHHTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYLLADRYPHEGKTWIATLFPNFKEISLGVRYTSAMYWSITTMTTVGYGDLHAVNTAEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRVKEHILAYMCLRFKAESLNQQQLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLQCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMHIKQADSMIIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKIAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFS | 634 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10256766 | 10263969 | - | CcPI632755_05g011260.1 | Cco05g1126 | 178754 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1126 | 634 | SMART | cnmp_10 | 403 | 520 | IPR000595 | - | |
| Cco05g1126 | 634 | FunFam | Potassium channel KAT3 | 85 | 327 | - | - | |
| Cco05g1126 | 634 | FunFam | Potassium channel KAT2 | 391 | 526 | - | - | |
| Cco05g1126 | 634 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
| Cco05g1126 | 634 | SUPERFAMILY | cAMP-binding domain-like | 330 | 520 | IPR018490 | - | |
| Cco05g1126 | 634 | SUPERFAMILY | Voltage-gated potassium channels | 78 | 326 | - | - | |
| Cco05g1126 | 634 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cco05g1126 | 634 | CDD | CAP_ED | 403 | 506 | IPR000595 | - | |
| Cco05g1126 | 634 | Gene3D | Jelly Rolls | 339 | 539 | IPR014710 | - | |
| Cco05g1126 | 634 | Gene3D | - | 85 | 326 | - | - | |
| Cco05g1126 | 634 | PANTHER | POTASSIUM CHANNEL AKT1 | 30 | 546 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cco05g1126 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 299 | 310 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1126 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 120 | 130 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1126 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 273 | 290 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1126 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 317 | 326 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cco05g1126 | 634 | Pfam | Cyclic nucleotide-binding domain | 423 | 505 | IPR000595 | - | |
| Cco05g1126 | 634 | ProSiteProfiles | KHA domain profile. | 562 | 634 | IPR021789 | - | |
| Cco05g1126 | 634 | Pfam | Ion transport protein | 83 | 332 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco05g1126 | 634 | Pfam | KHA, dimerisation domain of potassium ion channel | 562 | 633 | IPR021789 | - | |
| Cco05g1126 | 634 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 403 | 522 | IPR000595 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1126 | Cco-Chr5:10256766 | Cco05g1967 | Cco-Chr5:28740669 | 3.90E-131 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1126 | K21867 | - | csv:101205212 | 1141.33 |