Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1128 ATGAAAATGGAGGAAGACGACGAAGAAAGAAAATCCACCTTCCCAGCCACCACTACCACCAAATACAAAAGAGAAGCAAAAAGACTAGAAAATGGTGGAAAATTTCTTTCGACAACACCCGGTTTTTTCTTTTCTTCGGATTTTCCTTTGAAACCCATCTCAATTTCAGTACACCCAGTAAAGAATTCGATGCAAAATCAGGAAACGATGAAGATATTCAGTAGTTTCCTTCTTTGTTTACTCTCTGTAGTAACTGTAACTTCAGCAGCCACTCCAATCGCAAATCCCATCTGCCCAATGGACCTCAACTATGTCCTCAGAATCCCTTGGAATGCCACTGATTGTCGGAACCCTTTCTTCCAGACCACTGCCAAATCCGCCATGAATGATACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTTAAAGAGACTTCTCTTTTCAACCTCCCAGACCTAGCAACCTCCAATTCTTGCCTTCGCGATTACCAATCGAAGCTCTCCTCGCTCTCCCTTCCCGGCGACCTTGTTTCCAATTGCTTTAATCCTTTGCAATTTGTGATCTCTGCTAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCCTAACTCCCCGCTCGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCGCCGCTGGTCTCAAAGTTCAAGCGACTTTGACTCGAATTGATGGTAATAAATCTCATTCTATGGATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTGAATGAGTCTGGCCCTGAGGGCGACAGTGCGTTGGGTTGCATATTTAATTTGCCATTGAGTACTCAAAAGGATTCCAAAAGTAATCATTCTGCTCTAGTTTATGGCCTTACTGCTGCTGCTGTTGGAATTTTGGTTGTTTTTGTTCTTTTGGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTCAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGACGAACAAGGGTCTAGGCCACATGCCAGGCCAAACACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTAATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCCGAGTTTTGCAATGAGGTTGAAATAATCAGTAATCTGAAGCATAGGAATCTTGTTCCACTTCGTGGTTGTTGCGTGATCGATGGGGATGACGGTCATGATGAGGGAGCAAGTGAGAGATACCTTGTTTACGATTACATGCCAAATGGAAATCTCGATGACTATTTGTTCCCTATACCATTTGATGAAGTTGGAACTATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCATCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGGGAAACTCTAGACCCTTCACTGCTGAAAGATGGGGATTCTTCTAATTCAAATCCAAAAGCCATAATGGAAAGATTCATTGCGGTTGGAATTTTATGTTCTCATGTTATGGTTGCTTTGAGACCCACCATTATGGAAGCTCTGAAAATGTTGGAAGGTGACATTGAAGTTCCCCAAATTTCTGATCGGCCAGTGCCTTATGGACATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCGACATTAAGTGGACGCAAAAATGCTCCAAGAGTTTCTCATATAGCAACTCAAATGAAGGCTGCCATTCGGGATTATCCAATGCAGTCGGACGACGTTTTCTGA 1899 42.71 MKMEEDDEERKSTFPATTTTKYKREAKRLENGGKFLSTTPGFFFSSDFPLKPISISVHPVKNSMQNQETMKIFSSFLLCLLSVVTVTSAATPIANPICPMDLNYVLRIPWNATDCRNPFFQTTAKSAMNDTSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGDLVSNCFNPLQFVISANVCAGIQTTRDWVSKLGPNSPLDSGCRSELVGPGCDACLAAGLKVQATLTRIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALGCIFNLPLSTQKDSKSNHSALVYGLTAAAVGILVVFVLLGIGFWFYKWKKLAQKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATNNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGHDEGASERYLVYDYMPNGNLDDYLFPIPFDEVGTIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFIAVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGRKNAPRVSHIATQMKAAIRDYPMQSDDVF 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10322185 10324486 - CcPI632755_05g011280.1 Cco05g1128 178756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1128 632 Pfam SPARK 96 263 IPR043891 -
Cco05g1128 632 FunFam probable receptor-like protein kinase At1g11050 339 462 - -
Cco05g1128 632 SUPERFAMILY Protein kinase-like (PK-like) 359 477 IPR011009 -
Cco05g1128 632 ProSiteProfiles Protein kinase domain profile. 378 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1128 632 Gene3D Phosphorylase Kinase; domain 1 343 462 - -
Cco05g1128 632 MobiDBLite consensus disorder prediction 1 22 - -
Cco05g1128 632 ProSitePatterns Protein kinases ATP-binding region signature. 384 407 IPR017441 GO:0005524(InterPro)
Cco05g1128 632 Pfam Protein tyrosine and serine/threonine kinase 381 472 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1128 632 PANTHER OS01G0750732 PROTEIN 483 576 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1128 Cco-Chr5:10322185 Cco10g2120 Cco-Chr10:34452961 2.00E-26 dispersed
Cco05g1128 Cco-Chr5:10322185 Cco09g0637 Cco-Chr9:5649545 1.50E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86847 PF19160 SPARK 6.50E-33 No_clan Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1128 - - - 0.0