Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1152 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATCATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTCCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCAAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGAAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACAAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCAACTCAATCCAAAACAAGCCACAAAGGCCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACAATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCTAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGTACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCTGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAGCCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAACTTTCCCCTTCACGGCCGCTCCTTGAGACAAGCTGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCCGTTGCAGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCGAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGATAGTGATGGCGGAAACAAGAAATGGGTTGTTGAGTCCCTCTCATCAAATGGTAATTAA 1473 40.6 MEIDLSLKIDHHKEEIFKQQKDLQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNFLSFHENENKRHEEPTKQDLKLGEMAKKKRRVRSPSKKDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSANTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRQADDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGDSDGGNKKWVVESLSSNGN 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10591894 10596811 + CcPI632755_05g011520.1 Cco05g1152 178780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1152 490 MobiDBLite consensus disorder prediction 195 218 - -
Cco05g1152 490 SUPERFAMILY WRKY DNA-binding domain 223 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1152 490 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1152 490 MobiDBLite consensus disorder prediction 441 490 - -
Cco05g1152 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 445 IPR044810 GO:0003700(InterPro)
Cco05g1152 490 MobiDBLite consensus disorder prediction 441 463 - -
Cco05g1152 490 SMART WRKY_cls 230 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1152 490 Pfam WRKY DNA -binding domain 231 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1152 490 Coils Coil 160 187 - -
Cco05g1152 490 Gene3D WRKY domain 215 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1152 490 Coils Coil 50 84 - -
Cco05g1152 490 MobiDBLite consensus disorder prediction 132 171 - -
Cco05g1152 490 FunFam probable WRKY transcription factor 31 215 292 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1582 Cco-Chr1:28518814 Cco05g1152 Cco-Chr5:10591894 1.40E-42 dispersed
Cco05g1152 Cco-Chr5:10591894 Cco06g1839 Cco-Chr6:28658087 2.90E-41 dispersed
Cco10g2057 Cco-Chr10:33947930 Cco05g1152 Cco-Chr5:10591894 3.60E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59287 PF03106 WRKY 2.00E-24 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1152 - - - 0.0