Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1156 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCATCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCATTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAACAAGCCCCCAAGATGGCACGAACAACTGCAATGTTGGTGCCTCAACTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCCGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 46.93 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDHPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGIVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10642680 10644926 + CcPI632755_05g011560.1 Cco05g1156 178784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1156 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cco05g1156 428 FunFam Tubby-like F-box protein 111 428 - -
Cco05g1156 428 Gene3D Tubby Protein; Chain A 111 428 IPR025659 -
Cco05g1156 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cco05g1156 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cco05g1156 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cco05g1156 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cco05g1156 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cco05g1156 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cco05g1156 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cco05g1156 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cco05g1156 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cco05g1156 428 PANTHER TUBBY-RELATED 48 427 - -
Cco05g1156 428 CDD F-box_AtTLP-like 54 98 - -
Cco05g1156 428 SUPERFAMILY F-box domain 44 97 IPR036047 GO:0005515(InterPro)
Cco05g1156 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cco05g1156 428 Gene3D - 49 101 - -
Cco05g1156 428 Pfam Tub family 115 423 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1156 Cco-Chr5:10642680 Cco08g0447 Cco-Chr8:10908332 2.80E-189 dispersed
Cco05g1156 Cco-Chr5:10642680 Cco05g2127 Cco-Chr5:30253926 1.20E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59288 PF01167 Tub 8.30E-117 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1156 K19600 - csv:101216314 863.603