Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1171 ATGAGCATTACCGCGAATCAAAGAGGGTCCCGATCATGGACCACCGCCGAGGAGTTGCCGGTGTCCAGTTGGGCTCCGCTACCGCCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTCGTCGTCGTAGCAGAGATTATCTTTCTGGGTCGCCTTGATGTGGCTAAAAATGTAGCCATGGTCGATTCATGGGCTGATTTGTTTTACCGCTCGCCGCCTTCTCGTGCACTGATTGGCGGAGCTGATGATTTGAATTCCCGGTTTATTGACGGCGATCGGATTTCGGAATTGGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACATATTCTAGGGACTTCCAAAAGGAACCGATATTGGTTTCTGGTTCTGATGAGGGGCGGAAATCTTGTGCCATAGGATGTGAATTTCAGGCCAGTCCAAGTAAAGATCCGGATGCTGCTTTTGGTTTAAATCACGAGGGTGGAATGCCTTCAATTATTCGATCCATGGAATCATCCCTATATTATGCAGATAACAATATTGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATTATGGCCCCAGTGCAGGCAAAGAATGAGAGTGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACATCACAATAGATTCCTATGGTGCTTGTCACAGAAATCGTGATGGAAGCACAGTGGACAAATTGGAGACTCTGAAGCACTACAAGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCTGTTCCAGTGGTTATTGGAGCTCCAAACATTGAAGAGTTTGCTCCTTCACCTGCTTCACTTTTGCATATCAGGGAACTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGAAAATCCTGAGGCATTCAACAACTCTCTGAGGTGGAAATATGAGGGTCCATCTGATTCTTTCAAGGCACTATTGGACATGGCAGCAGTTCATTCATCATGTCGCCTTTGTATTCATGTGGCAACTGGTATTCATGAGACCGAAGAAAAGGGTCTAGCATTCAAAAATCGACCTTGTAAATGCACTAGAGGTTCGGAGACTGTTTATCACGTGTATGTAAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTCCAGTAATCTGACGGTTGAAGGGCTGGCATCAGCAGTGATTTCGAAGTTCAATTCTCTGAAGCACGTACCAATATGGAAGCAGGAGAGGCCTAAAAGCTTAAAAGGAGGGGATGAATTAAGGTTGTACAAAATATACCCAGTTGGGTTGACGCAAAGGCAAGCTTTATATACCTTCAGATTTAAAGAGGACTCTGATCTCAGAAGATATGTGGAAGATAACCCTTGTGCCAAATTTGAAGCCATTTTTGTATAG 1545 44.79 MSITANQRGSRSWTTAEELPVSSWAPLPPKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPSRALIGGADDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKEPILVSGSDEGRKSCAIGCEFQASPSKDPDAAFGLNHEGGMPSIIRSMESSLYYADNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKNESALAAAFISNCGARNFRLEALEALEKLNITIDSYGACHRNRDGSTVDKLETLKHYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIEEFAPSPASLLHIRELSDVESVANSMKYLAENPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHVATGIHETEEKGLAFKNRPCKCTRGSETVYHVYVRERGRFNSESIFLRSSNLTVEGLASAVISKFNSLKHVPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFRFKEDSDLRRYVEDNPCAKFEAIFV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10825099 10830281 + CcPI632755_05g011710.1 Cco05g1171 178799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1171 514 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 170 363 - -
Cco05g1171 514 Gene3D - 167 363 IPR038577 -
Cco05g1171 514 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 64 486 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Cco05g1171 514 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 113 385 - -
Cco05g1171 514 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 221 385 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0650 Cco-Chr2:6487056 Cco05g1171 Cco-Chr5:10825099 7.30E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1171 K00753 - csv:101202837 941.028