Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1175 ATGCCTGGGACTGGAAGTGTTGCTGTTCAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACTTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGACGCTTAATCCAGGACTGGTGCGTTGCCAATCGGTCTTACGGGGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTAGCCAAGCTTCGTCCAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGTCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTATTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGACGAATTGTTTGAAGGCGTTGTCGAAATCCTCAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGAGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATCGATCGATTTCCTGATTTGGAGAAGTACGACGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATACCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTGACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCAGCCGTCGGAGCTCTGGTGTCGCTGTGTTCGGCATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTGCAGTGAAATTGTGGTACCCTTTTGTTAA 1278 50.31 MPGTGSVAVQPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10898338 10899615 + CcPI632755_05g011750.1 Cco05g1175 178803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1175 425 CDD RING-Ubox_PUB 19 71 IPR045210 -
Cco05g1175 425 PANTHER WDSAM1 PROTEIN 15 408 IPR045185 GO:0061630(InterPro)
Cco05g1175 425 FunFam RING-type E3 ubiquitin transferase 12 94 - -
Cco05g1175 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Cco05g1175 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g1175 425 Gene3D - 93 413 IPR011989 -
Cco05g1175 425 SMART Ubox_2 21 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g1175 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Cco05g1175 425 Pfam U-box domain 18 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g1175 425 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0041 Cco-Chr2:475484 Cco05g1175 Cco-Chr5:10898338 3.00E-44 dispersed
Cco05g1175 Cco-Chr5:10898338 Cco07g0588 Cco-Chr7:7959886 8.40E-53 dispersed
Cco05g1175 Cco-Chr5:10898338 Cco10g1817 Cco-Chr10:31793055 1.10E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1175 - - - 0.0