Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1180 ATGGGCCCACAGTGCATTGCGATGGACGTGCAGTTTCATCTGCCCTCCAAACACTCGCGTTTTTTTGTTCCCGTCTCTTCCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGTTTTCCGGCGGCTGATCATTTCTCCACTCGGATCTTTCCGATTATCTATCCGTATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACCGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCCCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGTCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGGGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA 2127 47.2 MGPQCIAMDVQFHLPSKHSRFFVPVSSSVALYVTRRPVFRRLIISPLGSFRLSIRMAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10936911 10942044 - CcPI632755_05g011800.1 Cco05g1180 178808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1180 708 Pfam Poly-adenylate binding protein, unique domain 614 679 IPR002004 GO:0003723(InterPro)
Cco05g1180 708 Pfam RNA recognition motif 368 436 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 Pfam RNA recognition motif 174 242 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 Pfam RNA recognition motif 86 156 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 Pfam RNA recognition motif 265 333 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 FunFam Polyadenylate-binding protein 603 686 - -
Cco05g1180 708 FunFam Polyadenylate-binding protein 173 246 - -
Cco05g1180 708 CDD RRM2_I_PABPs 170 246 IPR045305 -
Cco05g1180 708 Gene3D - 173 245 IPR012677 -
Cco05g1180 708 CDD RRM4_I_PABPs 365 443 - -
Cco05g1180 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 244 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 FunFam Polyadenylate-binding protein 253 348 - -
Cco05g1180 708 SMART rrm2_1 367 439 IPR003954 GO:0003676(InterPro)
Cco05g1180 708 SMART rrm2_1 85 158 IPR003954 GO:0003676(InterPro)
Cco05g1180 708 SMART rrm2_1 264 336 IPR003954 GO:0003676(InterPro)
Cco05g1180 708 SMART rrm2_1 173 245 IPR003954 GO:0003676(InterPro)
Cco05g1180 708 Gene3D - 603 684 - -
Cco05g1180 708 SMART poly_2 619 682 IPR002004 GO:0003723(InterPro)
Cco05g1180 708 Gene3D - 248 348 IPR012677 -
Cco05g1180 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 340 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 607 684 IPR002004 GO:0003723(InterPro)
Cco05g1180 708 Gene3D - 52 172 IPR012677 -
Cco05g1180 708 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 443 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 FunFam Polyadenylate-binding protein 349 454 - -
Cco05g1180 708 Gene3D - 349 451 IPR012677 -
Cco05g1180 708 PANTHER RNA BINDING PROTEIN 74 265 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cco05g1180 708 MobiDBLite consensus disorder prediction 528 549 - -
Cco05g1180 708 FunFam Polyadenylate-binding protein 70 172 - -
Cco05g1180 708 SUPERFAMILY RNA-binding domain, RBD 263 447 IPR035979 GO:0003676(InterPro)
Cco05g1180 708 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 85 680 IPR006515 GO:0003723(InterPro)
Cco05g1180 708 CDD RRM1_I_PABPs 85 164 IPR034364 -
Cco05g1180 708 SMART rrm1_1 173 245 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 SMART rrm1_1 264 336 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 SMART rrm1_1 85 158 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 SMART rrm1_1 367 439 IPR000504 GO:0003723(InterPro)
Cco05g1180 708 SUPERFAMILY PABC (PABP) domain 550 700 IPR036053 GO:0003723(InterPro)
Cco05g1180 708 SUPERFAMILY RNA-binding domain, RBD 84 253 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0856 Cco-Chr5:7242982 Cco05g1180 Cco-Chr5:10936911 4.40E-29 dispersed
Cco05g1180 Cco-Chr5:10936911 Cco08g0857 Cco-Chr8:20441841 1.60E-189 dispersed
Cco08g1257 Cco-Chr8:24388477 Cco05g1180 Cco-Chr5:10936911 3.00E-08 transposed
Cco09g1719 Cco-Chr9:28872041 Cco05g1180 Cco-Chr5:10936911 3.70E-08 transposed
Cco02g0662 Cco-Chr2:6645631 Cco05g1180 Cco-Chr5:10936911 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1180 K13126 - csv:101219802 1203.73