Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1187 | ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAGGAGGAGAAATGGGAGGAGGAGGAGCAGGAGGAAAATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCTTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCGACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAAACTTGTTGTGGAGCATTCAAAGGCCTATTCCAATGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGCCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA | 1131 | 44.03 | MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEQEENVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYKLVVEHSKAYSNGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEEPKMKFHSLNRAFLDIVGSPS | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11027647 | 11029075 | + | CcPI632755_05g011870.1 | Cco05g1187 | 178815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1187 | 376 | SMART | cyclin_7 | 201 | 289 | IPR013763 | - | |
Cco05g1187 | 376 | SMART | cyclin_7 | 100 | 188 | IPR013763 | - | |
Cco05g1187 | 376 | MobiDBLite | consensus disorder prediction | 305 | 331 | - | - | |
Cco05g1187 | 376 | FunFam | CYCLIN D32 | 196 | 285 | - | - | |
Cco05g1187 | 376 | PANTHER | CYCLINS | 60 | 290 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cco05g1187 | 376 | Gene3D | - | 66 | 285 | - | - | |
Cco05g1187 | 376 | SUPERFAMILY | Cyclin-like | 61 | 195 | IPR036915 | - | |
Cco05g1187 | 376 | FunFam | D3-type cyclin | 88 | 195 | - | - | |
Cco05g1187 | 376 | ProSitePatterns | Cyclins signature. | 95 | 126 | IPR048258 | - | |
Cco05g1187 | 376 | CDD | CYCLIN_AtCycD-like_rpt2 | 197 | 287 | - | - | |
Cco05g1187 | 376 | CDD | CYCLIN_AtCycD-like_rpt1 | 94 | 192 | - | - | |
Cco05g1187 | 376 | Pfam | Cyclin, C-terminal domain | 197 | 310 | IPR004367 | - | |
Cco05g1187 | 376 | Pfam | Cyclin, N-terminal domain | 68 | 194 | IPR006671 | - | |
Cco05g1187 | 376 | Gene3D | - | 77 | 195 | - | - | |
Cco05g1187 | 376 | Coils | Coil | 25 | 45 | - | - | |
Cco05g1187 | 376 | SMART | Cyclin_C_2 | 197 | 332 | IPR004367 | - | |
Cco05g1187 | 376 | SUPERFAMILY | Cyclin-like | 198 | 259 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1509 | Cco-Chr4:30531423 | Cco05g1187 | Cco-Chr5:11027647 | 2.60E-28 | dispersed | |
Cco05g1187 | Cco-Chr5:11027647 | Cco08g1802 | Cco-Chr8:29125670 | 3.50E-79 | dispersed | |
Cco02g0687 | Cco-Chr2:6898797 | Cco05g1187 | Cco-Chr5:11027647 | 1.10E-69 | wgd | |
Cco04g1463 | Cco-Chr4:30072217 | Cco05g1187 | Cco-Chr5:11027647 | 5.20E-72 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1187 | K14505 | - | csv:101221213 | 646.351 |