Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1187 ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAGGAGGAGAAATGGGAGGAGGAGGAGCAGGAGGAAAATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCCATTTTGGCTGTTGCTTATTTTGACAGATTCCTCTTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCGACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAATGCTGTTACAAACTTGTTGTGGAGCATTCAAAGGCCTATTCCAATGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGCCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA 1131 44.03 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEQEENVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQCCYKLVVEHSKAYSNGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEEPKMKFHSLNRAFLDIVGSPS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11027647 11029075 + CcPI632755_05g011870.1 Cco05g1187 178815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1187 376 SMART cyclin_7 201 289 IPR013763 -
Cco05g1187 376 SMART cyclin_7 100 188 IPR013763 -
Cco05g1187 376 MobiDBLite consensus disorder prediction 305 331 - -
Cco05g1187 376 FunFam CYCLIN D32 196 285 - -
Cco05g1187 376 PANTHER CYCLINS 60 290 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco05g1187 376 Gene3D - 66 285 - -
Cco05g1187 376 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
Cco05g1187 376 FunFam D3-type cyclin 88 195 - -
Cco05g1187 376 ProSitePatterns Cyclins signature. 95 126 IPR048258 -
Cco05g1187 376 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Cco05g1187 376 CDD CYCLIN_AtCycD-like_rpt1 94 192 - -
Cco05g1187 376 Pfam Cyclin, C-terminal domain 197 310 IPR004367 -
Cco05g1187 376 Pfam Cyclin, N-terminal domain 68 194 IPR006671 -
Cco05g1187 376 Gene3D - 77 195 - -
Cco05g1187 376 Coils Coil 25 45 - -
Cco05g1187 376 SMART Cyclin_C_2 197 332 IPR004367 -
Cco05g1187 376 SUPERFAMILY Cyclin-like 198 259 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1509 Cco-Chr4:30531423 Cco05g1187 Cco-Chr5:11027647 2.60E-28 dispersed
Cco05g1187 Cco-Chr5:11027647 Cco08g1802 Cco-Chr8:29125670 3.50E-79 dispersed
Cco02g0687 Cco-Chr2:6898797 Cco05g1187 Cco-Chr5:11027647 1.10E-69 wgd
Cco04g1463 Cco-Chr4:30072217 Cco05g1187 Cco-Chr5:11027647 5.20E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1187 K14505 - csv:101221213 646.351