Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1191 ATGATGCACACCATGAAACCATCGCAACTTCTGGCTCTGTTTTCCACCTTTACTTTCTGTTTCCCCTGTCTTGCTCTCAACAGCGATGGCATTCTCTTGATTTCTCTCAAACACTCCATTCTCGGCGATCCTTTGTCTGTTTTCGCTAATTGGAATTTCTACGACGACACTCCCTGTTCCTGGCGTGGAGTTACCTGCACCGACCTCCGAGACTATGGCGGCGGATGGTCGGATTTCCTCAGAGTTACTGCCCTCTCCCTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTCCCCACTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCCAACAATGTTATCTCCGGCGAGTTGCCGGCGGACATTGGGGGTTTGAAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCCGGAAAAGTCCCGGGAAATCTCACTGCTCTGAAGAATCTAACTGCTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCTTCCAATTTGTTCAATGGGTCTTTGCCGGCTGATTTTGGTGGGGAGAAGCTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCGATTCCGCTGGATTTCGCCAAGAGGATTCCAATGAATGCGACTATGGATCTTTCTTTCAATAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCATTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCAATTCCTTCTTCACTCACAACCCCCCCAAATGTTTCTGAAAGTTCATCTTCGTCTCCAGCAATCGCCGCCATACCCAAAACAGTCGGCTCTGTTCCGGCAACACAGTCCCCCCGAGGTCCAAACGGGACACAAACTTCTCAGCCTCAAAACACCATGAAACCCATCACAATAGCTGCAATAGCAGTCGGAGACATCGCCGGAATCGCCATTCTCGCCGTTGTGATTCTCTACGTCTACCACCACCGGAAACGTAAAAACCCCAACTCCAAAACCCCTAAATCCACCGAGAAGAAGCCGCCGATTGACTCAGAACAAGACCCTCAAAGTAACCACAAAAAACCCTCATCAGTGTTATTCTGTTTAGCCAACAAAGGAGAAGAGACATCGGAGGCGACGAGTTCTTCCGACGGCGAAGAACAGAGAGAGAAACCTGGAACAACCCACGGCGGAGAGAATATAGACAGTAAGAAAAACGGCGTGCTGGTGACGGTGGACGGAGAAACAGAGCTGGAATTAGAGACTTTATTAAAGGCATCGGCGTATATACTTGGAGCGAGCGGGGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACCGCGTTCGCCGTCAGAAGGATCGGCGACGTCAGCGTGGAGAAATTGAGGGATTTTGAGAGCCAAGTGAGAGCCATTGCTAAGGTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTCTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCCAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATCTATCATTTGAAGTCCGAGTGAAAATCGCGAGAGGAATCGCCCGAGGACTGGCCTTCATCCACGACAAGAAGCACATCCATGGCAACCTCAAGCCTTCCAACATTCTCTTGAATTCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTGGACAAGCTCCTCTCCGGCAGATCGAAAATCGCAATCGCCTCCAGTTCTGCCCGGAACTTCGGCAGCCACAGATCCACGCCCAATCGCGAGTACCAAGACGCCAACGGCGGAAGCCCGTCGGTAAGCCTGGGATCGGCGTACCAGGCGCCGGAATCACTTAAGAATGTGAAAGCGAGCCCTAAATGGGATGTGTACTCGTTCGGGGTGATTCTGCTGGAGGTTGTGAGCGGGAAGATTGTGACGGAGAGGGAATTAGTCGGCGGTGAAGAGGAGGGGCGGATTAAGAAAATGGTGGATTTGGCGATTAGAGGGGAAGTGGAAGGGAAAGAAGAGGCGGTAATGGGGATTTTTAGATTAGGGTTTAGCTGTGTTAGTTTTTTGCCTCAAAAAAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGACAAAATTTCTTCCATCATTTCTTCTTCTAACACCTAA 2310 49.39 MMHTMKPSQLLALFSTFTFCFPCLALNSDGILLISLKHSILGDPLSVFANWNFYDDTPCSWRGVTCTDLRDYGGGWSDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPTSIFNASELQILSLSNNVISGELPADIGGLKSLQVLNLSDNALAGKVPGNLTALKNLTAVSLRSNYFTGEIPGNFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSPIPLDFAKRIPMNATMDLSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSESSSSSPAIAAIPKTVGSVPATQSPRGPNGTQTSQPQNTMKPITIAAIAVGDIAGIAILAVVILYVYHHRKRKNPNSKTPKSTEKKPPIDSEQDPQSNHKKPSSVLFCLANKGEETSEATSSSDGEEQREKPGTTHGGENIDSKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVSVEKLRDFESQVRAIAKVRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRVKIARGIARGLAFIHDKKHIHGNLKPSNILLNSEMEPLIADLGLDKLLSGRSKIAIASSSARNFGSHRSTPNREYQDANGGSPSVSLGSAYQAPESLKNVKASPKWDVYSFGVILLEVVSGKIVTERELVGGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVSFLPQKRPTMKEALQVLDKISSIISSSNT 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11064289 11068567 - CcPI632755_05g011910.1 Cco05g1191 178819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1191 769 MobiDBLite consensus disorder prediction 425 441 - -
Cco05g1191 769 Gene3D Phosphorylase Kinase; domain 1 442 543 - -
Cco05g1191 769 MobiDBLite consensus disorder prediction 375 449 - -
Cco05g1191 769 MobiDBLite consensus disorder prediction 635 656 - -
Cco05g1191 769 MobiDBLite consensus disorder prediction 321 341 - -
Cco05g1191 769 Pfam Leucine Rich Repeat 221 241 IPR001611 GO:0005515(InterPro)
Cco05g1191 769 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515(InterPro)
Cco05g1191 769 MobiDBLite consensus disorder prediction 380 400 - -
Cco05g1191 769 Gene3D Transferase(Phosphotransferase) domain 1 544 768 - -
Cco05g1191 769 FunFam Leucine-rich repeat receptor-like protein kinase 198 292 - -
Cco05g1191 769 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515(InterPro)
Cco05g1191 769 SUPERFAMILY L domain-like 26 288 - -
Cco05g1191 769 Pfam Protein kinase domain 474 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1191 769 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Cco05g1191 769 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
Cco05g1191 769 Gene3D Ribonuclease Inhibitor 26 194 IPR032675 -
Cco05g1191 769 Gene3D Ribonuclease Inhibitor 195 291 IPR032675 -
Cco05g1191 769 PANTHER OS05G0588300 PROTEIN 151 761 IPR050994 -
Cco05g1191 769 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 26 191 - -
Cco05g1191 769 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515(InterPro)
Cco05g1191 769 ProSiteProfiles Protein kinase domain profile. 468 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1191 Cco-Chr5:11064289 Cco05g2510 Cco-Chr5:33458521 9.50E-71 dispersed
Cco05g1191 Cco-Chr5:11064289 Cco02g0864 Cco-Chr2:10155281 1.60E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86849 PF00069 Pkinase 3.60E-30 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1191 - - - 0.0