Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1196 ATGTGGTGTAAATGCGATGCAGAAACTCAGTTCCTCCCTTCTTCAACCAAAATGGGTAGCATTGAAACAGACAGAACTGTAACAGGATTTGCCGCCAAAGACCCATCTGGGATTCTCTCTCCTTACACTTACACTCTCAGAAACACCGGCCCCCAAGATGTTTTCATCAAAGTCATTTGCTGTGGAATCTGCCACTCTGATCTTCACCAAATCAAGAATGAACTCGGCATGTCCAATTACCCCATGGTTCCTGGACACGAGGTGGTCGGGGAAGTGGTGGAGGTTGGATCCGAAGTGGATCGGTTCAGAGTTGGGGAGATGGTCGGAGTTGGGTGTATTCTTGGATCATGTTCGAGTTGTAATCCTTGTAATTCCGATAAGGAGCAGTACTGTAACAAGAGAATCTGGACCTATAACGACGTGTATCACGACGGCCGCCCCACCCAAGGCGGTTTCTCCTCCGCCATGGTTGTCCACCAAAAGTTTGTGGTGAGAATCCCAGATGGGATGTCGCCGGAGCAGGCGGCGCCGCTTCTGTGCGCGGGAGTGACGGTGTATAGCCCGCTAAGTCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGGCTGGGTGGCGTTGGGCATATGGGTGTGAAAGTGGCAAAAGCTTTGGGCCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGAGGAGGCTCTGGAACATCTCGGTGCCGACGAGTACTTGGTCAGCTCCAACAACACTCAAATGGAACGAGCCATTGACTCGCTCGATTACATTATCGACACCGTCCCTGTTTTTCATCCGCTCGAGCCGTATCTCTCACTGCTAAAACTCGACGGCAAATTGATTTTGATGGGTGTCATTAATACCCCATTGCAATTCGTTTCCCCTCTCCTTATGCTCGGGAGGAAGACAATTACAGGGAGCTTCATCGGAAGCATGACAGAGACACAAGAAGTATTGGATTTTTTTAAAGAGAAGGAGCTGAGCTCCATGATTGAAGTGATAAAGCTTGATTACATAAACAAGGCTTTCGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTCGTCGACATTGCCGGAAGTAAGCTGCCTCAGTGA 1125 49.6 MWCKCDAETQFLPSSTKMGSIETDRTVTGFAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQIKNELGMSNYPMVPGHEVVGEVVEVGSEVDRFRVGEMVGVGCILGSCSSCNPCNSDKEQYCNKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPDGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSNNTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMTETQEVLDFFKEKELSSMIEVIKLDYINKAFERLEKNDVRYRFVVDIAGSKLPQ 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11119277 11120951 - CcPI632755_05g011960.1 Cco05g1196 178824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1196 374 SMART PKS_ER_names_mod 37 365 IPR020843 GO:0016491(InterPro)
Cco05g1196 374 FunFam probable cinnamyl alcohol dehydrogenase 30 187 - -
Cco05g1196 374 SUPERFAMILY GroES-like 34 198 IPR011032 -
Cco05g1196 374 FunFam Putative cinnamyl alcohol dehydrogenase 6 338 367 - -
Cco05g1196 374 CDD CAD1 28 366 IPR047109 GO:0016616(InterPro)
Cco05g1196 374 Gene3D - 181 337 - -
Cco05g1196 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 335 IPR036291 -
Cco05g1196 374 PANTHER ALDEHYDE REDUCTASE 26 368 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Cco05g1196 374 FunFam Cinnamyl alcohol dehydrogenase 181 337 - -
Cco05g1196 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 85 99 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cco05g1196 374 Pfam Alcohol dehydrogenase GroES-like domain 50 168 IPR013154 -
Cco05g1196 374 Gene3D - 30 367 - -
Cco05g1196 374 Pfam Zinc-binding dehydrogenase 208 331 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1196 Cco-Chr5:11119277 Cco09g2103 Cco-Chr9:35395673 4.90E-12 dispersed
Cco01g0126 Cco-Chr1:1097201 Cco05g1196 Cco-Chr5:11119277 9.10E-85 transposed
Cco04g1584 Cco-Chr4:31215056 Cco05g1196 Cco-Chr5:11119277 8.50E-107 transposed
Cco05g1779 Cco-Chr5:26444826 Cco05g1196 Cco-Chr5:11119277 1.90E-99 transposed
Cco02g0698 Cco-Chr2:7064879 Cco05g1196 Cco-Chr5:11119277 4.40E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1196 K00083 - csv:101222395 639.417