Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1222 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAGTTCCTTCAGTGGAGCAACGCTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTGTTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGATGTTGGAGGAAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGATTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGGTGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTGTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGTCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGAAATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1353 42.2 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNSSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHCFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSDVGGNNNNNNNNNNCSARFNNGIVSVEGIKCLNNNVNSNNSNAASSSSDVCSHGMVMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQLSDQRAPPDRSGQSLPELEFGSSTLWSNSSRDVWPQRNSNEMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11476135 11482486 - CcPI632755_05g012220.1 Cco05g1222 178850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1222 450 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 448 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cco05g1222 450 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Cco05g1222 450 SUPERFAMILY Homeodomain-like 263 319 IPR009057 -
Cco05g1222 450 MobiDBLite consensus disorder prediction 320 343 - -
Cco05g1222 450 Gene3D - 265 322 - -
Cco05g1222 450 MobiDBLite consensus disorder prediction 1 48 - -
Cco05g1222 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 266 319 IPR006447 GO:0003677(InterPro)
Cco05g1222 450 MobiDBLite consensus disorder prediction 320 393 - -
Cco05g1222 450 FunFam Myb family transcription factor 264 322 - -
Cco05g1222 450 MobiDBLite consensus disorder prediction 372 393 - -
Cco05g1222 450 MobiDBLite consensus disorder prediction 12 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0914 Cco-Chr1:10146012 Cco05g1222 Cco-Chr5:11476135 1.10E-32 dispersed
Cco01g1631 Cco-Chr1:29022251 Cco05g1222 Cco-Chr5:11476135 1.20E-33 dispersed
Cco05g1222 Cco-Chr5:11476135 Cco10g0139 Cco-Chr10:1324670 2.80E-38 dispersed
Cco05g1222 Cco-Chr5:11476135 Cco09g1174 Cco-Chr9:11466671 9.20E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59296 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1222 - - - 0.0