Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1222 ATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTATTCTTCAATTAGAACCCTCAACCATGGATTTTCAGAAAAAAGTTTTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATATTTCAAATGACCCTCGAACTCAAATTGAGCTCTCTCTAGGAACCACCAACAACAACAGTTCCTTCAGTGGAGCAACGCTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTGTTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCATCGAGGCAGCGATGTTGGAGGAAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGATTGTTTCAGTAGAAGGAATTAAATGTTTGAATAATAATGTTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGGTGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTGTCCGATCAAAGAGCTCCGCCCGACCGGTCCGGCCAGTCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGAAATGGATGTCATAACACCAACTTTCATGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1353 42.2 MPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSSSSSSSSYSSIRTLNHGFSEKSFDLLIQRNSQFQNNISNDPRTQIELSLGTTNNNSSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHCFHQFPSACFFPNYSNTNTNGSSGGGGVVEMGYHHHHHRGSDVGGNNNNNNNNNNCSARFNNGIVSVEGIKCLNNNVNSNNSNAASSSSDVCSHGMVMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQLSDQRAPPDRSGQSLPELEFGSSTLWSNSSRDVWPQRNSNEMDVITPTFMSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11476135 11482486 - CcPI632755_05g012220.1 Cco05g1222 178850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1222 450 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 10 448 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cco05g1222 450 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Cco05g1222 450 SUPERFAMILY Homeodomain-like 263 319 IPR009057 -
Cco05g1222 450 MobiDBLite consensus disorder prediction 320 343 - -
Cco05g1222 450 Gene3D - 265 322 - -
Cco05g1222 450 MobiDBLite consensus disorder prediction 1 48 - -
Cco05g1222 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 266 319 IPR006447 GO:0003677(InterPro)
Cco05g1222 450 MobiDBLite consensus disorder prediction 320 393 - -
Cco05g1222 450 FunFam Myb family transcription factor 264 322 - -
Cco05g1222 450 MobiDBLite consensus disorder prediction 372 393 - -
Cco05g1222 450 MobiDBLite consensus disorder prediction 12 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1222 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0914 Cco-Chr1:10146012 Cco05g1222 Cco-Chr5:11476135 1.10E-32 dispersed
Cco01g1631 Cco-Chr1:29022251 Cco05g1222 Cco-Chr5:11476135 1.20E-33 dispersed
Cco05g1222 Cco-Chr5:11476135 Cco10g0139 Cco-Chr10:1324670 2.80E-38 dispersed
Cco05g1222 Cco-Chr5:11476135 Cco09g1174 Cco-Chr9:11466671 9.20E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco05g1222 . 248 448 G2-like Transcription Factor Family AT5G16560 57.3 1.4e-44 177.6
Cco09g1174 . 196 357 G2-like Transcription Factor Family AT5G16560 58.0 4.7e-37 152.5
Cco05g2205 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 1.5e-40 163.3
Cco08g1731 . 52 138 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cco08g0647 . 20 258 G2-like Transcription Factor Family AT1G25550 54.9 8.5e-54 207.6
Cco05g2566 . 19 256 G2-like Transcription Factor Family AT1G25550 55.8 3.2e-53 205.7
Cco05g2566 . 19 352 G2-like Transcription Factor Family AT1G68670 50.6 5.9e-68 255.0
Cco03g0134 . 1 269 G2-like Transcription Factor Family AT3G46640 52.0 6.4e-61 231.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cco05g0383 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.0e-65 245.7
Cco05g0383 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.3e-79 293.5
Cco02g2008 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cco07g0226 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cco09g2488 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Cco04g1886 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cco11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.4e-50 196.4
Cco09g2488 . 1 382 G2-like Transcription Factor Family AT1G79430 54.9 3.7e-86 315.5
Cco02g2008 . 1 181 G2-like Transcription Factor Family AT1G79430 85.2 2.8e-73 272.7
Cco05g0383 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.4e-39 159.5
Cco04g1885 . 97 339 G2-like Transcription Factor Family AT2G01060 62.3 5.9e-56 214.5
Cco04g0701 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cco10g1632 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 2.8e-83 305.8
Cco04g0701 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59296 PF00249 Myb_DNA-binding 2.10E-05 CL0123 Cco TF