Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1240 ATGGATTATATGATGGACGGTCGTGGGGGTTATGGCGGTGGGTCAACTGATGAACAAGAAGGTTCTAATGATCGCAAGGGGAAAAAGACTTACCATCGTCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAGGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATCAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGACAACTCTTCGCTTCGGACGGAGAATGAAAAGATTCAATGTGAAAATCTTGCGATTAGAGAAGCGTTGAGGAATGTGATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAACGGCAGCGCAATCTCCAAAAACTACGTCTTGAAAATTCTCACTTAAAAGAAGAGCATGACAAAGTGTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCAATTGATTTGTCACCAAGAAGTTCCCTTACCCAAATAGTTGCAAGTCCTGCAGTCGATCTTATTTCTGATCCTGTGATATTAGATGGAGCAGCAACACCCTACCAATCAAGAGGTATTAATGATTTGGAAAATGCTCTTATGTTGGAAACTGCTGCAACTGCCTTGGAAGAGTTAATCAGACTTCTGAGGATTGATGAGCCTTTGTGGATGAAGACCCTGAATGATGGGAGGTATGTTCTCCATCGTGAAAGCTACGACAAAATATTTCCTAGACCAAATCACTTCAAATCTTCTAGTGCTCGTACTGAATCATCAAAAGCTTCAGGAGTGGTGACAATGAGTGCAATTCAATTGGTTGATTTTTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACCATCATTATGAATGCAGACACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGTGCTTTGCAGTTGATGTATCAACAAATGCACATCTTTTCACCCCTCGTGTCTCCTCGGGACTTCTGCTTCCTTCGACACTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATTGTGGATGTTTCATATGAAATCTTAAAGGATTGTGTCACCTCTGCCCGCTGCTGGAGGCTTCCTTCTGGATGCTTGATTCAAGAAATGCCCAATGGTTGCTCTAAGATTACCTGGGTCGAGCATGTGGAAGTGGATGATAAAACACAAACCCACCGGCTCTATCGAGATCTTGTGTTCAATACTTTGGCATATGGAGCTGATCGATGGTTTTTCACTCTTCAAAGGATGTGTGAGAGATTGGCTTACACTTTCAGGGAACCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCCTGAAGGTAGGAGAAGCATCACGAAGCTGTCACATAGAATGGTAAAAAATTTCTGTGGCGTACTGAGCATGTCAGGTAAATTAGATTTCCCTCAGATATCTGAAGTGAACAACAGCGGTGTTCGAATATCTGTTCGGATTAGCTCGGAACTGGGGCAACCCAGTGGGACAGTCGTTAGTGCGGCGACATCTCTTTGGCTTCCCCTGCAACCTGAAATTATCTTTAATTTCTTCAGGGATGAGAAGGCCAGAGTTCAGTGGGATGTTCTCTCTTATGGCAACCCAGTACATGAAATTGCACACATCTTAACAGGAGTTCATCCAGGAAACTCAATATCGATAATTCGGCCATTCGTCCCGACTGAGAACAACATGCTGATTCTTCAAGAAAGCTGCATAGATCCGCTAGGATCCTTAGTGATATATGCACCCATCGACTTGCCTGCTATGAACATTGCAACAAGTGGTCAGGACCCATCAGGGATACCGATACTTCCATCAGGGTTCGTAATCACAGGGGATGGCCGTATGCATTCAGGAATTGGAGCTTCGACGAGTGCTACCTCAGGGAGGCCGAGCGGGTCTCTGTTAACCATAGCTTTTCAGATATTGGTGTCCAGTGTATCATCTTCAAAACAACTGAATGTGGAGTCTGTGGCAACAGTGAATACTCTTATTAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2127 44.05 MDYMMDGRGGYGGGSTDEQEGSNDRKGKKTYHRHNPYQIQQLESFFRACPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSSLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEHDKVSNLLAKYIGKPISQLESLLPVLGSSIDLSPRSSLTQIVASPAVDLISDPVILDGAATPYQSRGINDLENALMLETAATALEELIRLLRIDEPLWMKTLNDGRYVLHRESYDKIFPRPNHFKSSSARTESSKASGVVTMSAIQLVDFFLDADKWADLFPTIIMNADTFHIIDPGMPGNRSGALQLMYQQMHIFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCVTSARCWRLPSGCLIQEMPNGCSKITWVEHVEVDDKTQTHRLYRDLVFNTLAYGADRWFFTLQRMCERLAYTFREPSHELGGVLTSPEGRRSITKLSHRMVKNFCGVLSMSGKLDFPQISEVNNSGVRISVRISSELGQPSGTVVSAATSLWLPLQPEIIFNFFRDEKARVQWDVLSYGNPVHEIAHILTGVHPGNSISIIRPFVPTENNMLILQESCIDPLGSLVIYAPIDLPAMNIATSGQDPSGIPILPSGFVITGDGRMHSGIGASTSATSGRPSGSLLTIAFQILVSSVSSSKQLNVESVATVNTLISATVQRIKAALNCSGLD 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11911439 11915319 + CcPI632755_05g012400.1 Cco05g1240 178868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1240 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 705 IPR042160 -
Cco05g1240 708 MobiDBLite consensus disorder prediction 1 31 - -
Cco05g1240 708 SUPERFAMILY Bet v1-like 466 640 - -
Cco05g1240 708 SUPERFAMILY Bet v1-like 218 449 - -
Cco05g1240 708 SUPERFAMILY Homeodomain-like 14 86 IPR009057 -
Cco05g1240 708 Gene3D - 225 426 IPR023393 -
Cco05g1240 708 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
Cco05g1240 708 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Cco05g1240 708 SMART START_1 225 447 IPR002913 GO:0008289(InterPro)
Cco05g1240 708 Coils Coil 84 104 - -
Cco05g1240 708 SMART HOX_1 27 89 IPR001356 GO:0003677(InterPro)
Cco05g1240 708 Pfam START domain 227 447 IPR002913 GO:0008289(InterPro)
Cco05g1240 708 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g1240 708 CDD homeodomain 28 86 IPR001356 GO:0003677(InterPro)
Cco05g1240 708 Gene3D - 15 102 - -
Cco05g1240 708 CDD START_ArGLABRA2_like 221 446 - -
Cco05g1240 708 Coils Coil 127 154 - -
Cco05g1240 708 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289(InterPro)
Cco05g1240 708 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1859 Cco-Chr1:31132874 Cco05g1240 Cco-Chr5:11911439 5.60E-211 dispersed
Cco05g1240 Cco-Chr5:11911439 Cco09g1176 Cco-Chr9:11579859 4.10E-145 dispersed
Cco05g1240 Cco-Chr5:11911439 Cco06g0006 Cco-Chr6:87865 1.70E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59297 PF01852 START 3.80E-36 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1240 K09338 - csv:101205899 1311.98