Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1287 ATGGAGAATTTAATGGGTTTGCTAAGAATCCATGTGTTTAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTAAAGACTCGAGTAGTGAAGCAAAACATCAATCCAGAATGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATCTTCCAGTGAATGTGCTCGTATACGACAGAGACTTATTCTCACTCGACGACAAGATGGGGGATGCAGAGTTCGACGTTCGACCGTTCATGGAAGCAGTGAAGATGAGATTGAACAATCTCCCAAGTGGCACCATCATAACAAAGATTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG 498 39.36 MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKIQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 12906163 12907655 - CcPI632755_05g012870.1 Cco05g1287 178915
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1287 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cco05g1287 165 SMART C2_3c 7 102 IPR000008 -
Cco05g1287 165 Pfam C2 domain 6 93 IPR000008 -
Cco05g1287 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Cco05g1287 165 Gene3D C2 domain 4 160 IPR035892 -
Cco05g1287 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Cco05g1287 165 CDD C2_ArfGAP 6 148 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1650 Cco-Chr1:29240734 Cco05g1287 Cco-Chr5:12906163 2.20E-64 dispersed
Cco05g1287 Cco-Chr5:12906163 Cco07g0645 Cco-Chr7:10394361 6.00E-47 dispersed
Cco05g1287 Cco-Chr5:12906163 Cco06g1624 Cco-Chr6:26838525 3.00E-67 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1287 - - - 0.0