Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1287 | ATGGAGAATTTAATGGGTTTGCTAAGAATCCATGTGTTTAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTAAAGACTCGAGTAGTGAAGCAAAACATCAATCCAGAATGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATCTTCCAGTGAATGTGCTCGTATACGACAGAGACTTATTCTCACTCGACGACAAGATGGGGGATGCAGAGTTCGACGTTCGACCGTTCATGGAAGCAGTGAAGATGAGATTGAACAATCTCCCAAGTGGCACCATCATAACAAAGATTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG | 498 | 39.36 | MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKIQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 12906163 | 12907655 | - | CcPI632755_05g012870.1 | Cco05g1287 | 178915 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1287 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Cco05g1287 | 165 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Cco05g1287 | 165 | Pfam | C2 domain | 6 | 93 | IPR000008 | - | |
| Cco05g1287 | 165 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
| Cco05g1287 | 165 | Gene3D | C2 domain | 4 | 160 | IPR035892 | - | |
| Cco05g1287 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 91 | IPR035892 | - | |
| Cco05g1287 | 165 | CDD | C2_ArfGAP | 6 | 148 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1650 | Cco-Chr1:29240734 | Cco05g1287 | Cco-Chr5:12906163 | 2.20E-64 | dispersed | |
| Cco05g1287 | Cco-Chr5:12906163 | Cco07g0645 | Cco-Chr7:10394361 | 6.00E-47 | dispersed | |
| Cco05g1287 | Cco-Chr5:12906163 | Cco06g1624 | Cco-Chr6:26838525 | 3.00E-67 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1287 | - | - | - | 0.0 |