Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1300 ATGATCTTTTCATGGAGGAAAAACAAATTTGGGTTTCTTACCAAGTTGAAGAAAGAGCTTCCGGGGGTGGATTCGGGTTCGGAAATTGCGATTCCTTCGCATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTACGATAGAGAGAGTATCGAGAAGTGGATTGAGGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGATTTGATGAATTTCGACCTAATCCCTAATCATGCGTTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGTTCATACGGGATCGAGCGGATTCCGACGCCGCGGATTCCGGTTACCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATCTCGATCGCGACTCAAAGAAGCGACTCGAAGAGGTGCAGTGAATTAGTTGGTAAGATCAGGAATTGGGCAAAAGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAACTGGGGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGCTTGTGTGTTCCCAGTCGCCATTGAAGGCTTATCCAAGCTCGGATCTGCTGATTCTTTGAGAAGTTTGGTTTCCTTCTTAATTGGCAAAGATCTTTCTCCCAAACAGAACGCAGTTTTTGTTCTGAAAGAACTCTTGTCAGCTGATCGAAGATATGTTAATTCATTGGCTGCCATTGAAGGAGTATCAGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTGCTACAAAAGCATCTCTTACAGCCATTTTTTACATCATTTTACCATCAGAAATCGGTGAGAAAATGGCATTGAAATTTGTGGAACTTGGCTTGGTCTCTCAGCTACTAGAATTTTTGGTAGATGCAGAGAAAAGTCTATGTGAGAAAGCTTTGGGAATTTTGGATGGAATCTGTGATTACAAACAAGGAAGAGAGAAGCTTTACGAGAATGCACTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGAGAGAAGGGTGAAAATGAGGTGAGGGTGGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTACAGGTCTTCAATGGCTGA 1218 43.02 MIFSWRKNKFGFLTKLKKELPGVDSGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIEGGNFSCPVTKQDLMNFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVTPYEVKEICSRISIATQRSDSKRCSELVGKIRNWAKESERNRRCIVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLACVFPVAIEGLSKLGSADSLRSLVSFLIGKDLSPKQNAVFVLKELLSADRRYVNSLAAIEGVSEALVSIIRDPLCPSATKASLTAIFYIILPSEIGEKMALKFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYENALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGENEVRVEAAQLGAFQKILVLLQVFNG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13178125 13179865 + CcPI632755_05g013000.1 Cco05g1300 178928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1300 405 SUPERFAMILY ARM repeat 142 387 IPR016024 -
Cco05g1300 405 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g1300 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Cco05g1300 405 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Cco05g1300 405 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g1300 405 PANTHER WDSAM1 PROTEIN 28 402 IPR045185 GO:0061630(InterPro)
Cco05g1300 405 CDD RING-Ubox_PUB 32 84 IPR045210 -
Cco05g1300 405 Gene3D - 121 402 IPR011989 -
Cco05g1300 405 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g1300 405 SUPERFAMILY RING/U-box 25 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1300 Cco-Chr5:13178125 Cco07g0588 Cco-Chr7:7959886 1.20E-112 dispersed
Cco05g1300 Cco-Chr5:13178125 Cco10g1817 Cco-Chr10:31793055 2.00E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1300 - - - 0.0