Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1306 ATGGAGTTCCCCCAAGGAATTTTAGCGGCGGCGGTTCTGAGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCCGCGCTGGTGGGGTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCACCCTGTTTTTGGGCTGGTGTTAACTGTGACAGGAGTGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGCCTTTCCGGTGAGCTTCCCTTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGAAACTTGTTTTCCGGCGAGATTCCGGCGTTTCTGTTCGATTTGCAGAATCTTGTTCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATCTCTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTTACCGGAGTAGTTCCTGACTTAAATCTCACTCTTGAACAATTTAATGTCTCCTTTAATCGATTGAATGGTTCAATTCCCTCGAGGCTCTCTAGTTTTCCGGCGAGTTGTTTTGAGGGGAATTTGCTCTGTGGGGCACCATTGTTATTCTGTAACTCGACAGCCACCGAGCCTGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCTGGAATTGTGATCGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTTTGTGTCAAAGAAAGAGTAAAGGGAAATCGGAGTCGAAAGAGGGAGTTCGGTCGGCTGGTGAGGTTGGGGTGCCGAGAGAGAAGATGACGACAGTGGAAGGGAGTAGCGAAAGGGTAAGCATAGATCATTTGACTATAGCGAAATCATCAGCGAAGGGCGGGGAAAAGGATAAGAAATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCGTCGGCGGAGGTCCTAGGGAAGGGGGCGTTCGGGACAGCGTATAAGGCGACACTGGAGACGGGGATGGTGGTGGCTGTGAAGCGGTTGAAGGAGATGACTGCGGCGGAGAAGGAGTTCAGGGAGAAAATGGAGGAGGTGGGGAAGATGAAGCATGAAAATTTAGTTCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAGTCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGCTGGGAGTTAGCCGTGGGATTGATTACCTTCATTCTCAAGGCCCTACCATCTCTCATGGCAACATCAAATCCTCTAATGTTCTCCTCACCAGATCATACGAAGCATGTGTATCCGACTTTGGCCTTGCACAACTAGCCATGTCCCCATCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACGGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTTGGAGTGTTGTTATTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTACAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTTGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAATGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTCCCAGAAACAGAGTGAGGCAATTGACAATGATGGAAATAATGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAGTAG 1932 47.98 MEFPQGILAAAVLSFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCFWAGVNCDRSGVFELRLPAMGLSGELPLGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFSGEIPAFLFDLQNLVRLNMADNNFSGEISSGFNNLSRLATLYLQNNQFTGVVPDLNLTLEQFNVSFNRLNGSIPSRLSSFPASCFEGNLLCGAPLLFCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILLCQRKSKGKSESKEGVRSAGEVGVPREKMTTVEGSSERVSIDHLTIAKSSAKGGEKDKKLVFFGNVGNVFDLEDLLRASAEVLGKGAFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGKMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVSRGIDYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTGKSPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGMDEIVRRIEELCRSTSQKQSEAIDNDGNNGISTQFHSLNSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13329979 13332262 + CcPI632755_05g013060.1 Cco05g1306 178934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1306 643 Gene3D Ribonuclease Inhibitor 133 220 IPR032675 -
Cco05g1306 643 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Cco05g1306 643 MobiDBLite consensus disorder prediction 612 643 - -
Cco05g1306 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cco05g1306 643 Coils Coil 371 391 - -
Cco05g1306 643 CDD STKc_IRAK 344 607 - -
Cco05g1306 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cco05g1306 643 ProSiteProfiles Protein kinase domain profile. 338 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1306 643 PANTHER OS05G0588300 PROTEIN 11 612 IPR050994 -
Cco05g1306 643 FunFam pollen receptor-like kinase 1 307 412 - -
Cco05g1306 643 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Cco05g1306 643 SUPERFAMILY L domain-like 46 205 - -
Cco05g1306 643 Gene3D Transferase(Phosphotransferase) domain 1 413 631 - -
Cco05g1306 643 Gene3D Ribonuclease Inhibitor 27 132 IPR032675 -
Cco05g1306 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Cco05g1306 643 SMART LRR_typ_2 112 136 IPR003591 -
Cco05g1306 643 SMART LRR_typ_2 88 111 IPR003591 -
Cco05g1306 643 SMART LRR_typ_2 160 183 IPR003591 -
Cco05g1306 643 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515(InterPro)
Cco05g1306 643 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Cco05g1306 643 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
Cco05g1306 643 Gene3D Phosphorylase Kinase; domain 1 306 412 - -
Cco05g1306 643 Pfam Protein tyrosine and serine/threonine kinase 342 603 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0907 Cco-Chr1:10064608 Cco05g1306 Cco-Chr5:13329979 1.10E-138 dispersed
Cco05g1306 Cco-Chr5:13329979 Cco11g0287 Cco-Chr11:2900088 4.30E-125 dispersed
Cco05g1306 Cco-Chr5:13329979 Cco01g1639 Cco-Chr1:29132530 8.50E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86850 PF00069 Pkinase 7.20E-39 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1306 - - - 0.0