Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1317 ATGGCGACGCTAATGTCGGGCTCCAGAATTCAACCAGCAGCTTCTGTTCTTTCCTCCTCCATCAAGCGCCATCTGGGTTTTAATTCCCACCTTCGTTCCAATTGCTCGCTTTCTCCTTTTCACCATTCTTCATTCTCATTCAGGCGCTCTGGACCTAGACGATCTCTCTCTGTTTCCATGTCCGTTACCCCTCTAGAAGCCTGCGTCAAAGCTTCCATTACCGTACCCAACAAGCTCGGCGACTGCCCTTTTTGTCAAAGGGTATTACTGACTTTGGAGGAAAAGCATGTACCCTATGACTTAAAGTTGGTAGACCTGTCAAACAAGCCAGAATGGTTCTTAAAAATAAATTCAGAGGGCAAAGTTCCCGTTGTTAAATTTGATGAGCAGTGGGTTGCAGATTCAGATATTATAACACAAACACTGGAAGAGAAGTACCCAAATCCACCTTTAGCTACCCCTCCTGACAAATCTTCAGTAGGATCAAAGATTTTCTCCACATTTATTGCTTTTCTAAAGAGCAAGGATCCTAACGATGGAACAGAACAAGCATTGATTAGCGAGCTAAGTTCTTTCAATGATCACATCAAAGAGAATGGCTCTTTTATCAACGGGAAAGAGATTTCTGCTGCAGACCTGTCACTTGGTCCAAAGTTGTACCATCTAGAAATTGCATTGGGTCACTACAAGAACTGGTCTGTTCCAGACAGTCTTCCTTACGTTAAATCTTACATGAAGAGCATATTTTCAAGAGAATCATTTGCAAACACTCGTGCCCTGCCTGAGGATGTTATTGCTGGTTGGCGTCCGAAGGTTTTTGGTTAA 825 43.27 MATLMSGSRIQPAASVLSSSIKRHLGFNSHLRSNCSLSPFHHSSFSFRRSGPRRSLSVSMSVTPLEACVKASITVPNKLGDCPFCQRVLLTLEEKHVPYDLKLVDLSNKPEWFLKINSEGKVPVVKFDEQWVADSDIITQTLEEKYPNPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALISELSSFNDHIKENGSFINGKEISAADLSLGPKLYHLEIALGHYKNWSVPDSLPYVKSYMKSIFSRESFANTRALPEDVIAGWRPKVFG 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13578245 13583189 - CcPI632755_05g013170.1 Cco05g1317 178945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1317 274 Pfam Glutathione S-transferase, N-terminal domain 82 144 IPR004045 -
Cco05g1317 274 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 65 271 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(InterPro)|GO:0045174(PANTHER)|GO:0098869(InterPro)
Cco05g1317 274 SFLD Main (cytGST) 81 248 - -
Cco05g1317 274 FunFam Glutathione S-transferase DHAR3 chloroplastic 63 151 - -
Cco05g1317 274 SUPERFAMILY Thioredoxin-like 80 149 IPR036249 -
Cco05g1317 274 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 72 150 IPR004045 -
Cco05g1317 274 SUPERFAMILY GST C-terminal domain-like 145 272 IPR036282 -
Cco05g1317 274 Gene3D Glutaredoxin 63 151 - -
Cco05g1317 274 FunFam Glutathione S-transferase DHAR3, chloroplastic 152 274 - -
Cco05g1317 274 SFLD Glutathione Transferase (cytosolic) 81 248 IPR040079 -
Cco05g1317 274 CDD GST_N_family 82 143 - -
Cco05g1317 274 Gene3D - 152 273 - -
Cco05g1317 274 CDD GST_C_DHAR 151 271 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1456 Cco-Chr2:26979410 Cco05g1317 Cco-Chr5:13578245 1.20E-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1317 K21888 - csv:101203335 489.189