Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1320 ATGAAGCGAGGCCACACCCATCAATCCTCAAATTCCGCCGCCGCAGCCGCTGGCAACCCCAAGACATGGGCGGTCGAGGATGAGGAAGACGACGACAAGCATCTAGCTGCTCTTGGGTACAATGTCCGGTCGTCGGACATGGCGGACGTAGCTCTGAAACTGGAACAGCTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCCAATACAGTCCATTACAATCCCTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATAACCCACGATCCTGTTCTTGCCATAGCTGAATCCACTTCCTCCTCCATCGCCGCCGCCTTCACCGACGATTCTGAGTACGATCTCAGAGCCATTCCTGGAGTTGCTGCTTTCCCACAAATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCAGATTCCGAATCGCTTCTTGTTACTGCATCTTCTTCTTCTTCTTCGTCGTCGTCGTCGGAGCAGTCGCGCTCGGTGGTTCTCGTGGATTCCGCCGAGACTGGCGTCCGTCTGGTCCACAGCCTTCTCGCCTGCGCCGACGCCGTCCACACAAACAATCTCAACCTTGCCGAGGCTCTACTAAAACACATCAGAATCCTCGTTGAAGCTCAGGCCGGCGCTATGAGAAAAGTCGCCGGCTATTTCGCTCAAGCCCTCTCTCGCCGGATTTACAGATTCTACCCACAAAAGCCCTTCGATTATTCATCTTCATACACCGATCTTCTCCAAATGCATTTCTATGAATCTTGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGTTCTGCTGGTACCGTCCACGTCGTCGATTTCAACCTCCAGCAAGGCCACCAATGGCCGCCGTTGATTCAGGCCTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCATCCCCCGCCGGAGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCGCAATTTGCGGATAAATTCGGCGTGAAATTCGAATTTCGTGGGTTCTTCTGCAACAATTTGGCCGATCTGGAACCGTCAATACTCAATTTAGAAACAGAAACCGTCGCTATAAACTCCATTTTCGAGCTCCACCGGCTACTGGCCAATCCGGGCGCGATTGAAAAAGCTCTAACAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCAGGTCGCCGACCACAATGGACCGTCGTTCGTAGACCGATTCACAGAAGCTCTACACTATTATTCGAGCTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAGGAGGATGTGGTAAGGTCAGAGGAATATTTAGGGAGACAAATCTGCAACGTAGTGGCGTGTGAAGGTTCCGACCGTGTCGAGCGTCATGAAACGGTGGCGCAGTGGCGGAGCCGGTTACGCTCGAGTGGGTTCGAGATGGTTCATATGGGTTCGAACGCTTTCAAGCAGGCCAGTACTTTGCTGGCGGCTCTGTTCGGCGGTGGAAATGGATACAGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGATGGCACACTCGGCCGCTCATCGCCACTTCGGCCTGGACGATGGCCCGAGGCGGCGACAGCGGCGAGTCAACTCGGCCGAGTTCAGGACAGATCTGA 1719 52.65 MKRGHTHQSSNSAAAAAGNPKTWAVEDEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGITHDPVLAIAESTSSSIAAAFTDDSEYDLRAIPGVAAFPQIDSTNPRKRFKKSDSESLLVTASSSSSSSSSSEQSRSVVLVDSAETGVRLVHSLLACADAVHTNNLNLAEALLKHIRILVEAQAGAMRKVAGYFAQALSRRIYRFYPQKPFDYSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSAGTVHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIHPPPEENSTDGLQEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSILNLETETVAINSIFELHRLLANPGAIEKALTTIKELNPKIVTVVEQVADHNGPSFVDRFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQICNVVACEGSDRVERHETVAQWRSRLRSSGFEMVHMGSNAFKQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTMARGGDSGESTRPSSGQI 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13769902 13771620 + CcPI632755_05g013200.1 Cco05g1320 178948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1320 572 FunFam DELLA protein GAI 30 95 - -
Cco05g1320 572 Pfam Transcriptional regulator DELLA protein N terminal 32 98 IPR021914 -
Cco05g1320 572 Gene3D - 31 95 IPR038088 -
Cco05g1320 572 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 172 553 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cco05g1320 572 SMART DELLA_2 32 105 - -
Cco05g1320 572 MobiDBLite consensus disorder prediction 1 29 - -
Cco05g1320 572 Pfam GRAS domain family 193 554 IPR005202 -
Cco05g1320 572 ProSiteProfiles GRAS family profile. 184 554 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0141 Cco-Chr3:1373861 Cco05g1320 Cco-Chr5:13769902 2.20E-43 dispersed
Cco03g0873 Cco-Chr3:10432190 Cco05g1320 Cco-Chr5:13769902 1.90E-175 dispersed
Cco05g1320 Cco-Chr5:13769902 Cco06g1218 Cco-Chr6:21893271 1.10E-116 dispersed
Cco05g1320 Cco-Chr5:13769902 Cco02g2141 Cco-Chr2:34191314 1.90E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59302 PF03514 GRAS 8.70E-124 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1320 K14494 - csv:101203095 998.038