Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1351 | ATGGCGATTGTGATTTTTCTAACAACACTTTTAGTGATTTTTATTTCATCACTTGCAAAGATTGCATATGATACAGTCTCATGCTACTGGCTGACCCCAAGAAGAATCAGGAAGAAGATGGAGAAACAAGGCGTTCGTGGCCCCGACCCACGGCCGCTGCTCGGAAACATCCTCGACGTAGCGGCACTTGTGGCAAAATCCACTGCCAACGACATGAGCTCGATTGATCACGACATCGTCGACCGCCTATTGCCTCATTACACCACCTGGACAAAGCAATATGGAAAGAGATTTATATATTGGAACGGGATGGAGCCGAGGCTATGTTTGGCGGAGACGGAATTGATAAAAGAAGTATTGAGTAAAAACAGCAATGTGTGTGGGAAATCATGGCTGCAAAGACAGGGAACCAAACATTTCATTGGGAAAGGATTGTTGATGGCAAATGGGGAAGATTGGTATCATCAACGTCACATCGTTGCACCTGCGTTTATGGGGGATAAGCTCAAGAACTATGCGGGGATGATGGTGGAGTGCACTAAGAAAATGATCCAATCACTAGAGGTCGAGTTTGACTCGGGCCGAACCGAGTTTGAGATCGCCGATTACATGAAACAACTCACCGCTGACATTATTTGTCGGACCGAGTTCGATGCCAACTCCGACAAGGGCAAAGAAATCTTCCATTTGCTCACTCTTCTCCAGCGCCTCTGCGCCCAAGCCAGCCGCCACCTCTGCCTCCCCGGTAGCCGGTTTTTTCCAAGTAAATACAACAGAGAAATAAAGTCACTGAAAATGGAGGTAGAGAGGTTGTTAATGGAGATTATTCAGAGCAGAAAAGATGGTGTGGAGATTGGAAGAAGTACTTGCTATGGATGTGATTTGTTGGGAATGCTATTGAATGAAATGCAAAGGAAAAGTGAGGATAATGGTTTCAGCTTGAACTTGCAGCTCATAATGGATGAATGCAAAACTTTCTTCTTTGCTGGTCATGAAACCACTGCCCTTTTGCTCACTTGGACCATCATGTTGCTTGCCACTAACCCTAATTGGCAACAAAAAGTTCGTCATGAGGTCAATCAAGTTTGCAACAATGGTGGAACTCCCTCTGTTGAACATCTCTCTAAGTTCACTTTGCTAAACATGGTGATAAACGAATCGCTAAGGCTTTACCCACCGGCAACGGTGCTTCCGAGAATGGCGTTTGAGGACATAAAAGTAGGAGATTTAGAGATCCCAAAAGGACTATCGATATGGATTCCAGTGCTTGCAATTCATCATAGTGAAGAGTTATGGGGAAAAGATGCAAACGAATTCAAACCAGAAAGATTTGCCTCAAAACCATTTAGTGGTGGACGTTTCATTCCATTTGCATCTGGACCAAGAAACTGCATTGGCCAAGGCTTTGCATTGATGGAAGCTAAGATCATTTTGGCTATGTTTCTCTCAAAGTTTAGCTTCACTGTTTCAGATTCTTATCGCCATGCTCCTGTTAGTGTTCTCACCATACAGCCTAAGTATGGAGTTCAAGTTTATTTGACTCCACTCAATTCTAATTAG | 1560 | 44.04 | MAIVIFLTTLLVIFISSLAKIAYDTVSCYWLTPRRIRKKMEKQGVRGPDPRPLLGNILDVAALVAKSTANDMSSIDHDIVDRLLPHYTTWTKQYGKRFIYWNGMEPRLCLAETELIKEVLSKNSNVCGKSWLQRQGTKHFIGKGLLMANGEDWYHQRHIVAPAFMGDKLKNYAGMMVECTKKMIQSLEVEFDSGRTEFEIADYMKQLTADIICRTEFDANSDKGKEIFHLLTLLQRLCAQASRHLCLPGSRFFPSKYNREIKSLKMEVERLLMEIIQSRKDGVEIGRSTCYGCDLLGMLLNEMQRKSEDNGFSLNLQLIMDECKTFFFAGHETTALLLTWTIMLLATNPNWQQKVRHEVNQVCNNGGTPSVEHLSKFTLLNMVINESLRLYPPATVLPRMAFEDIKVGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFKPERFASKPFSGGRFIPFASGPRNCIGQGFALMEAKIILAMFLSKFSFTVSDSYRHAPVSVLTIQPKYGVQVYLTPLNSN | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 14372675 | 14376578 | + | CcPI632755_05g013510.1 | Cco05g1351 | 178979 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1351 | 519 | Coils | Coil | 261 | 281 | - | - | |
| Cco05g1351 | 519 | Gene3D | Cytochrome P450 | 29 | 518 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | Pfam | Cytochrome P450 | 87 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | SUPERFAMILY | Cytochrome P450 | 78 | 515 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | E-class P450 group I signature | 91 | 110 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1351 | 519 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 6 | 509 | IPR050665 | GO:0004497(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0977 | Cco-Chr5:8531224 | Cco05g1351 | Cco-Chr5:14372675 | 8.20E-87 | dispersed | |
| Cco05g1351 | Cco-Chr5:14372675 | Cco05g2170 | Cco-Chr5:30534743 | 5.60E-99 | dispersed | |
| Cco05g1351 | Cco-Chr5:14372675 | Cco11g0560 | Cco-Chr11:5979096 | 2.20E-233 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1351 | K10717 | - | csv:101213604 | 992.26 |