Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1351 ATGGCGATTGTGATTTTTCTAACAACACTTTTAGTGATTTTTATTTCATCACTTGCAAAGATTGCATATGATACAGTCTCATGCTACTGGCTGACCCCAAGAAGAATCAGGAAGAAGATGGAGAAACAAGGCGTTCGTGGCCCCGACCCACGGCCGCTGCTCGGAAACATCCTCGACGTAGCGGCACTTGTGGCAAAATCCACTGCCAACGACATGAGCTCGATTGATCACGACATCGTCGACCGCCTATTGCCTCATTACACCACCTGGACAAAGCAATATGGAAAGAGATTTATATATTGGAACGGGATGGAGCCGAGGCTATGTTTGGCGGAGACGGAATTGATAAAAGAAGTATTGAGTAAAAACAGCAATGTGTGTGGGAAATCATGGCTGCAAAGACAGGGAACCAAACATTTCATTGGGAAAGGATTGTTGATGGCAAATGGGGAAGATTGGTATCATCAACGTCACATCGTTGCACCTGCGTTTATGGGGGATAAGCTCAAGAACTATGCGGGGATGATGGTGGAGTGCACTAAGAAAATGATCCAATCACTAGAGGTCGAGTTTGACTCGGGCCGAACCGAGTTTGAGATCGCCGATTACATGAAACAACTCACCGCTGACATTATTTGTCGGACCGAGTTCGATGCCAACTCCGACAAGGGCAAAGAAATCTTCCATTTGCTCACTCTTCTCCAGCGCCTCTGCGCCCAAGCCAGCCGCCACCTCTGCCTCCCCGGTAGCCGGTTTTTTCCAAGTAAATACAACAGAGAAATAAAGTCACTGAAAATGGAGGTAGAGAGGTTGTTAATGGAGATTATTCAGAGCAGAAAAGATGGTGTGGAGATTGGAAGAAGTACTTGCTATGGATGTGATTTGTTGGGAATGCTATTGAATGAAATGCAAAGGAAAAGTGAGGATAATGGTTTCAGCTTGAACTTGCAGCTCATAATGGATGAATGCAAAACTTTCTTCTTTGCTGGTCATGAAACCACTGCCCTTTTGCTCACTTGGACCATCATGTTGCTTGCCACTAACCCTAATTGGCAACAAAAAGTTCGTCATGAGGTCAATCAAGTTTGCAACAATGGTGGAACTCCCTCTGTTGAACATCTCTCTAAGTTCACTTTGCTAAACATGGTGATAAACGAATCGCTAAGGCTTTACCCACCGGCAACGGTGCTTCCGAGAATGGCGTTTGAGGACATAAAAGTAGGAGATTTAGAGATCCCAAAAGGACTATCGATATGGATTCCAGTGCTTGCAATTCATCATAGTGAAGAGTTATGGGGAAAAGATGCAAACGAATTCAAACCAGAAAGATTTGCCTCAAAACCATTTAGTGGTGGACGTTTCATTCCATTTGCATCTGGACCAAGAAACTGCATTGGCCAAGGCTTTGCATTGATGGAAGCTAAGATCATTTTGGCTATGTTTCTCTCAAAGTTTAGCTTCACTGTTTCAGATTCTTATCGCCATGCTCCTGTTAGTGTTCTCACCATACAGCCTAAGTATGGAGTTCAAGTTTATTTGACTCCACTCAATTCTAATTAG 1560 44.04 MAIVIFLTTLLVIFISSLAKIAYDTVSCYWLTPRRIRKKMEKQGVRGPDPRPLLGNILDVAALVAKSTANDMSSIDHDIVDRLLPHYTTWTKQYGKRFIYWNGMEPRLCLAETELIKEVLSKNSNVCGKSWLQRQGTKHFIGKGLLMANGEDWYHQRHIVAPAFMGDKLKNYAGMMVECTKKMIQSLEVEFDSGRTEFEIADYMKQLTADIICRTEFDANSDKGKEIFHLLTLLQRLCAQASRHLCLPGSRFFPSKYNREIKSLKMEVERLLMEIIQSRKDGVEIGRSTCYGCDLLGMLLNEMQRKSEDNGFSLNLQLIMDECKTFFFAGHETTALLLTWTIMLLATNPNWQQKVRHEVNQVCNNGGTPSVEHLSKFTLLNMVINESLRLYPPATVLPRMAFEDIKVGDLEIPKGLSIWIPVLAIHHSEELWGKDANEFKPERFASKPFSGGRFIPFASGPRNCIGQGFALMEAKIILAMFLSKFSFTVSDSYRHAPVSVLTIQPKYGVQVYLTPLNSN 519
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 14372675 14376578 + CcPI632755_05g013510.1 Cco05g1351 178979
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1351 519 Coils Coil 261 281 - -
Cco05g1351 519 Gene3D Cytochrome P450 29 518 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 Pfam Cytochrome P450 87 491 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS P450 superfamily signature 329 346 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 SUPERFAMILY Cytochrome P450 78 515 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS E-class P450 group I signature 338 364 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PRINTS E-class P450 group I signature 318 335 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1351 519 PANTHER CYTOCHROME P450 FAMILY MEMBER 6 509 IPR050665 GO:0004497(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0977 Cco-Chr5:8531224 Cco05g1351 Cco-Chr5:14372675 8.20E-87 dispersed
Cco05g1351 Cco-Chr5:14372675 Cco05g2170 Cco-Chr5:30534743 5.60E-99 dispersed
Cco05g1351 Cco-Chr5:14372675 Cco11g0560 Cco-Chr11:5979096 2.20E-233 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1351 K10717 - csv:101213604 992.26