Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1355 | ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTAATGAACCTCATCAACGCTGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCAGCTACTGGCGATGGACCACCGTTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAAGAATCGCCTCTACTGTCGATGAGTCGACTCGGCGATTCTGCTCTACCGAGTTGAACAGGTCGTCCAGCGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTGTTCCGATCAGAATCCACTTCGGTACTGAAATCCACGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA | 921 | 52.44 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRVKTRCRFKRSAVKAKGSKRIASTVDESTRRFCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESTSVLKSTGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 14554073 | 14555086 | - | CcPI632755_05g013550.1 | Cco05g1355 | 178983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1355 | 306 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
Cco05g1355 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 267 | - | GO:0010468(PANTHER) | |
Cco05g1355 | 306 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - | |
Cco05g1355 | 306 | PIRSF | AS2 | 1 | 301 | IPR017414 | - | |
Cco05g1355 | 306 | MobiDBLite | consensus disorder prediction | 199 | 215 | - | - | |
Cco05g1355 | 306 | MobiDBLite | consensus disorder prediction | 184 | 229 | - | - | |
Cco05g1355 | 306 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1501 | Cco-Chr4:30444222 | Cco05g1355 | Cco-Chr5:14554073 | 1.40E-44 | dispersed | |
Cco05g1355 | Cco-Chr5:14554073 | Cco05g2535 | Cco-Chr5:33640458 | 1.80E-52 | dispersed | |
Cco05g1355 | Cco-Chr5:14554073 | Cco06g1678 | Cco-Chr6:27368673 | 1.20E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59304 | PF03195 | LOB | 1.80E-24 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1355 | - | - | - | 0.0 |