Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1438 ATGGAGCAAGGATCTGGGATTTCCACTCCTTCCAATCCTTCTCAGCTCTCGCGGGCATGTCTTACAAGGAATATAATACTTGCATACCAAAGTTTCGGAGTAGTGTATGGAGATTTGAGCACTTCACCCCTCTATGTTTACTCAAGTACATTTGCGGGGAAGTTGCAGAAACATCGAACTGAGGAAGTAGTATTTGGTGCATTCTCCTTGATCTTCTGGACTTTTACTCTGATACCATTACTAAAGTATGTTTTCATTGTATTGAGCGCAGATGACAATGGTGAAGGAGGAACCTTTGCTCTTTACTCCCTGCTCTGCCGACATGCTAAGTTGAGTTTACTTCCCAACCAACAAGCAGCTGATGAGGAGCTCTCAGCATACAGATATGGTCCATCTTCTCATGCAGTAGCCCCTTGTCAACTAAAAAGGTTTTTGGAAAGGCATAAAACACTTAGGACGATCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGAGTGCTAACTCCTGCAATTTCAGTTCTATCCTCAGTTTCAGGTTTACAAGTTACTGAAGCAAAATTGACCAACGGGACACTCCTTTTGATTGCTTGTGCCATATTGGTTGGTCTGTTTGCTCTGCAGCATTGTGGCACCCATAAGGTTGCATTTATGTTTGCTCCAATAGTTATCATCTGGTTGTTGTCAATTTTCTCCATTGGTCTGTACAACATAATACATTGGAACCCAAGTATTATTCGTGCAATTTCCCCTCATTATGTTATCAAGTTCTTACAAATCACTGGTAAAGATGGTTGGCTTTCTCTCGGAGGGGTTCTTCTGGCCATAACTGGTACTGAGGCGATGTTTGCAGATCTTGGTCATTTCACGGCTTTGTCGATAAGGATTGCATTTGCATTTGTTATCTACCCTTGTTTGGTAGTACAATACATGGGTCAAGCTGCCTTTCTGTCTAAGAACCTTGATTTGTTTCCAAACAGTTTTTATGACTCGATACCTGATCCTGTATTTTGGCCTGTTTTTGTTATTGCCACCCTTGCAGCTATTGTGGGGAGCCAGGCTGTCATTACTGCTACTTTCTCTATTGTCAAACAATGCCATGCCCTTGGTTGCTTTCCAAGAGTAAAAGTTGTCCACACCTCTAAACACATATATGGGCAGATCTACATCCCAGAAATAAACTGGATATTAATGATCCTCACTCTTTCCATTACAATAGGGTTTCAAGATACTACACTGATCGGAAATGCTTATGGACTCGCCTGCATGACAGTTATGTTCACAACAACATTTCTTATGGCACTTGTCATAGTATTCGTTTGGCAAAAAAGTATCCTGCTAGCCGCACCTTTTCTCATCTTCTTCTGGTCTGTCGAGGGTGCCTACTTATCAGCAGCAATCATAAAAGTGCCTCAAGGAGGGTGGGTCCCGCTTGTGCTATCAGCCTTTTTTATGATAGTTATGTTTGTCTGGCACTATGGCACTCGCAAGAAGTACAACTTTGATCTACACAATAAAGTTTCACTGAAGTGGTTGCTTGGACTAGGCCCTAGCCTTGGTATAGTTCGTGTCCCTGGGATTGGCCTCATATACTCGGAATTGGCGACAGGAGTACCCGCAATATTTTCTCACTTTGTGACAAATCTCCCTGCATTTCACAAGGTTTTAGTGTTTGTTTGTGTAAAGTCTGTTCCAGTTCCATATGTCTCTCCCGAAGAACGTTTTCTGATTGGGAGAGTCTGTCCTAGACCATATCGCATGTATCGGTGCATAGTGAGATATGGCTACAAGGACATTCAGAAGGATGATGGGGACTTTGAGAACCAACTGATACTAAACATTGCAGAATTTATTCAAATGGAGGCAGAGGAACCACAATTCTCAAGCTCTGAAAGTTCTTCAGTTGATGGGAGGATGGCAGTAATAAGCACTCGGAGTATACAATCAAGCTTGAGTTTAATAGTGTCAGGGCATGAAGAAATCGGTACCAGCAACTCCATCTATAGCAGCAAATCTGCCACACTCCAAAGTTTACGATCTGTGTATGAGGATGAGAATCCACAACTAAGAAGGCGCCAAGTGAGATTTCAGCTATCTCCCAGCCCTTCAATGGACCCTAGAGTTAGGGAAGAATTAATAGACTTGATCCAAGCCAAAGAAGCGGGTGTAGCATATATAATGGGGCACTCATATGTGAAGGCCAGAAGATCTTCGTCGTATTTGAAGAAGCTGGTGATAGATATCGGATACTCGTTCCTCCGAAAGAACTGCAGAGGCCCGTCTGTTGCGCTCAATATCCCTCACATCAGTCTAATCGAAGTGGGCATGATATATTATGTTTAG 2355 42.68 MEQGSGISTPSNPSQLSRACLTRNIILAYQSFGVVYGDLSTSPLYVYSSTFAGKLQKHRTEEVVFGAFSLIFWTFTLIPLLKYVFIVLSADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYRYGPSSHAVAPCQLKRFLERHKTLRTILLLVVLFGACMVIGDGVLTPAISVLSSVSGLQVTEAKLTNGTLLLIACAILVGLFALQHCGTHKVAFMFAPIVIIWLLSIFSIGLYNIIHWNPSIIRAISPHYVIKFLQITGKDGWLSLGGVLLAITGTEAMFADLGHFTALSIRIAFAFVIYPCLVVQYMGQAAFLSKNLDLFPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLSITIGFQDTTLIGNAYGLACMTVMFTTTFLMALVIVFVWQKSILLAAPFLIFFWSVEGAYLSAAIIKVPQGGWVPLVLSAFFMIVMFVWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQKDDGDFENQLILNIAEFIQMEAEEPQFSSSESSSVDGRMAVISTRSIQSSLSLIVSGHEEIGTSNSIYSSKSATLQSLRSVYEDENPQLRRRQVRFQLSPSPSMDPRVREELIDLIQAKEAGVAYIMGHSYVKARRSSSYLKKLVIDIGYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16234497 16241709 - CcPI632755_05g014380.1 Cco05g1438 179066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1438 784 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 22 784 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco05g1438 784 Pfam K+ potassium transporter C-terminal domain 529 782 IPR053952 -
Cco05g1438 784 NCBIfam potassium uptake protein 27 784 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco05g1438 784 Pfam K+ potassium transporter integral membrane domain 27 516 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0061 Cco-Chr3:595701 Cco05g1438 Cco-Chr5:16234497 6.40E-237 dispersed
Cco03g0423 Cco-Chr3:4537682 Cco05g1438 Cco-Chr5:16234497 1.60E-206 dispersed
Cco03g0425 Cco-Chr3:4547377 Cco05g1438 Cco-Chr5:16234497 6.90E-211 dispersed
Cco05g1438 Cco-Chr5:16234497 Cco09g2095 Cco-Chr9:35333752 2.50E-252 dispersed
Cco05g1438 Cco-Chr5:16234497 Cco10g1428 Cco-Chr10:27365148 1.10E-252 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1438 K03549 - csv:101208973 1506.89