Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1458 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTTGACGCCGACCATGACGACTCCTCTTCTTGGTCCAGAACCAACCACCACAACGACGACGCCATCGCCATTTCCGCCGCCGGCTCCATTTCCTCCTTCAAATCCATCCTCGAATCCGACTGGTATATCAACTCTACTACTCCTCTTAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCACCCCGACATTCGAGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCGCTCCAGCTTGCCTCCTCACAAATCATCTTGTTTCTCTTCTCTTCTTAACGTTGTTTGCAGCAATAATTTTGATAATGCCTTCGATTTAGGCGGTGAGAGTGGTCTGCTTGGATCTTACCCAGGGAACCAAGCTTCCAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCCTCTCTTCCTCAAATCGGTAATCAGGAGCTCAGCTTAAACAACTCGGAGTTTCCGGCGACTCGGTTGCTTCCGGTCGCCGATAGCCCTCCTGCATTCGGAGCTGGATTTAATCCGGCGGCTGCTTTCGAGAGCTTCGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGTGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAGTTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGCTCAATGTGGACGCCGAATTTGGAGAGCCTGAGGAAGATGACCGGCGACGAGGACATTGAGGACGGCAGCGTGGATTTTTCTCGCTTGAATTACGATTCCGACGACCCCAATGAGTATCATAAGCAAGAGGACAATGTTAACACTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACGGCAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGACTGCCGGCGAAAAATCTCATGGCAGAGCGGCGGCGGAGAAAGAAACTGAATGATAGACTTTACATGCTTAGGTCCGTGGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGACTATTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTCGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCCTCTGCGAGCTTTCACCCTTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTTTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGATGTCTTTCGCGCTGAGCAATCCAAGGAAGATCAGGAGATCTTGCCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGCATTATATAA 1617 49.85 MLPKSTGILWLDADHDDSSSWSRTNHHNDDAIAISAAGSISSFKSILESDWYINSTTPLNPSHQDFHSLSSHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSRSSLPPHKSSCFSSLLNVVCSNNFDNAFDLGGESGLLGSYPGNQASNSSVLMGFTGISSLPQIGNQELSLNNSEFPATRLLPVADSPPAFGAGFNPAAAFESFDACGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGPDKLESLEVSGFKLGEGSMWTPNLESLRKMTGDEDIEDGSVDFSRLNYDSDDPNEYHKQEDNVNTKNCGSNSNANSTATGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEDQEILPEQIKAVLLDSAGLHGII 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17366415 17369296 - CcPI632755_05g014580.1 Cco05g1458 179086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1458 538 MobiDBLite consensus disorder prediction 321 340 - -
Cco05g1458 538 MobiDBLite consensus disorder prediction 299 351 - -
Cco05g1458 538 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Cco05g1458 538 FunFam BHLH transcription factor 343 411 - -
Cco05g1458 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 415 IPR036638 GO:0046983(InterPro)
Cco05g1458 538 Pfam Plant bHLH transcription factor, ACT-like domain 455 528 IPR054502 -
Cco05g1458 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983(InterPro)
Cco05g1458 538 CDD bHLH_AtAMS_like 350 414 - -
Cco05g1458 538 Coils Coil 390 410 - -
Cco05g1458 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 301 533 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco05g1458 538 MobiDBLite consensus disorder prediction 299 320 - -
Cco05g1458 538 CDD ACT_UUR-ACR-like 467 531 - -
Cco05g1458 538 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983(InterPro)
Cco05g1458 538 Gene3D - 341 410 IPR036638 GO:0046983(InterPro)
Cco05g1458 538 SMART finulus 353 402 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0399 Cco-Chr3:4345649 Cco05g1458 Cco-Chr5:17366415 8.20E-136 dispersed
Cco04g1576 Cco-Chr4:31146122 Cco05g1458 Cco-Chr5:17366415 1.20E-30 dispersed
Cco05g1458 Cco-Chr5:17366415 Cco11g1535 Cco-Chr11:28224385 5.50E-33 dispersed
Cco05g1458 Cco-Chr5:17366415 Cco08g1344 Cco-Chr8:25321866 3.80E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59309 PF00010 HLH 2.20E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1458 - - - 0.0