Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1465 ATGGCCATCTCTGAAACTCAGTTCCCTTCTTCTCTCATCCCTAATTTCCTCTACTCCTCTTCTGCCATTCCATTCCACAAGATTTTCCGCTCCAATCTTCCTTCTGAATCGCCATCTCCCAGCCTCGAATCCTCCCCTTCGATGAAGGCCTTCGCGGTTCCTTCTCCCACTGAACCGCGCAAGAAATTGGAGATGTATTCGCCGGCTTTCTACGCCGCCTGTGCCGTCGGTGGAAGCCTCAGCTGCGGTCTCACTCACATGACCGTCACTCCGCTCGATCTCGTCAAGTGTAATATGCAGATTGACCCGGTGAAATACAAGAGCATTTCATCTGGTTTTGGAATTTTGCTAAAGGAGCAAGGAATCAGGGGGCTGTTTAGGGGTTGGGCGCCAACTCTACTAGGTTACAGTGCTCAGGGTGCTTGCAAGTATGGCATCTACGAATTCTTTAAGAAATACTATTCCGATATAGTCGGTCCTGAGTATGCAGCAAAGTACAAGACATTGATCTATCTTGCTGGTTCTGCATCTGCTGAAGTGATTGCAGATGTTGCACTTTGCCCCTTTGAAGCTGTTAAAGTTAGAGTTCAGACACAGCCAGGTTTTGCTAGAGGTTTGTCAGATGGCCTTCCTAAATTTGTTAGATCGGAAGGTGCTCTTGGGTTGTATAAGGGTATTGTTCCTCTGTGGGGACGTCAGATCCCATATACAATGATGAAGTTTGCAACATTTGAGAACCTGGTGGAACTCATATACAAGCATGTCATCCCCAAGCCAAAGAACGAATGCAGCAGCGCCTTGCAGCTCGGCGTCAGTTTTGCTGGTGGATATATTGCCGGTGTTTCTTGTGCTATAGTTTCTCATCCTGCGGATAATCTTGTCTCCTTTCTCAATAATGCTAAAGGGGCTACCGTTGGTGAGGCAGTTCAGAAGCTTGGATTATGGGGTCTCTTCACACGAGGGCTGCCTCTACGCATAGTGATGATTGGAACCCTCACTGGAGCTCAGTGGGTTATCTATGACGCATTCAAAGTTTCTGTGGGATTGCCAACTACCGGTGGGGTTGCCCCTCCCATTGCTGCATCCCCAGAGCATACAACTGCGAGTGCGTAG 1113 48.52 MAISETQFPSSLIPNFLYSSSAIPFHKIFRSNLPSESPSPSLESSPSMKAFAVPSPTEPRKKLEMYSPAFYAACAVGGSLSCGLTHMTVTPLDLVKCNMQIDPVKYKSISSGFGILLKEQGIRGLFRGWAPTLLGYSAQGACKYGIYEFFKKYYSDIVGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGALGLYKGIVPLWGRQIPYTMMKFATFENLVELIYKHVIPKPKNECSSALQLGVSFAGGYIAGVSCAIVSHPADNLVSFLNNAKGATVGEAVQKLGLWGLFTRGLPLRIVMIGTLTGAQWVIYDAFKVSVGLPTTGGVAPPIAASPEHTTASA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17548102 17553278 + CcPI632755_05g014650.1 Cco05g1465 179093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1465 370 Gene3D Mitochondrial carrier domain 70 352 IPR023395 -
Cco05g1465 370 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 46 356 IPR044677 GO:0005315(InterPro)|GO:0005315(PANTHER)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Cco05g1465 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 69 153 IPR018108 -
Cco05g1465 370 ProSiteProfiles Solute carrier (Solcar) repeat profile. 166 250 IPR018108 -
Cco05g1465 370 Pfam Mitochondrial carrier protein 167 254 IPR018108 -
Cco05g1465 370 Pfam Mitochondrial carrier protein 71 155 IPR018108 -
Cco05g1465 370 SUPERFAMILY Mitochondrial carrier 71 342 IPR023395 -
Cco05g1465 370 FunFam Phosphate carrier protein, mitochondrial 69 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0817 Cco-Chr1:8586453 Cco05g1465 Cco-Chr5:17548102 2.40E-165 dispersed
Cco02g0352 Cco-Chr2:3207823 Cco05g1465 Cco-Chr5:17548102 2.70E-85 dispersed
Cco05g1465 Cco-Chr5:17548102 Cco06g2028 Cco-Chr6:30258230 3.80E-150 dispersed
Cco05g1465 Cco-Chr5:17548102 Cco05g2345 Cco-Chr5:31967542 2.50E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1465 K15102 - csv:101203018 656.366