Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1509 ATGTTGAGCAAGATAAATTCTTGTGGACATGTGTTGGTGAAGACGGTGCTTTGTCTAAATAGTGATCAATTCCTTCAACTCGATGTTGGGTGTTGGGCAATTTGGGAGGATCAGAACAAGGACTTGCACTCTGAGCAGATGGAAACTGTCTATGATGGGAGTGGTGAAGATCAACGTCGACGTCGTATGTCACCCATCCAATTTGGGTGTCGGGTTGGGGTGATTATGAGAGATGCGCCTGGTGAGGTCTTGATAGCTTGCTCGTTGTACCAGCAAGGATCCCTTGATGGTGAAGCCGACCAAATTCTAGCTATTCTCACAGGTCTTCAAGTTGGTGTGGAGCTCAGAAGTGGCCCTCGCTTCTTCGGAGTTTTTCCAGTTTCCTCTTCGAATCGGTTGCGTTCAATTCCGCTCGACGCTCGTGGAGGTTCTATTACATCGACGATGGGAAGGCGATCCGTATGGGTTGCACTTCTTGTCTTTTCTCTTCTTCTTTCGCTGCGACCCCACACAGTTTCTTCCACTCTTCCTCTTCAATCATTGATTCAGGGTTCTAAAGATTCTGCCAGTGAAAGTACTCCAGAGGATTGGAACAATGCTCATGAGGTACATTGCTCAAGAGAAAGGAGTAGGGCGGCGTGGAAAATAATTGAGGAGTATCTAATGCCCTTTGTGGAAAAAAAGAAATACAAGATTTCTACTAAGTGTAGACTTCACCCTGATAATGATATGTTCAGAGATCAAGAACAGCACAAGAGCCATCTAGATTTTAATGACTGGAAGTGTGGATATTGTAGGAAAAGATTCTACGAAGAAAAGTATCTCGATCAGCACTTTGACAATAGACACTATAATTTGCTCAATGTGAGTCGAAGCAGGTGCTTGGCAGATCTTTGTGGTGCATTGCACTGTGACCATGTGATAGATACAGTATCACAGAGAAGTAAATGCAATCCTGCTGCTGCTGCAAGAAATAAACATATGTGTGAGGGTCTTGCTGACAGCTGTTTTCCGGTTGATGAGGGTGCTTCGGCCAGCCATCTTCACGAATTCTTCTTGCGCCAGTTCTGTGATGCACACACATGTAGCGGAAAGCCAAAACCTTTCTCCAGAGGTCGACAGGCTAGGACGAGTGCGTTCTACATTGTGATTTCAGTTTTGACCGTCCTTTTTGTGCTGTTTTTCTATGTCTTCATTTACTTGTATAGGAGGGGAATGAGAACTCAACCACAGGTGCTGAAGCGTCTCTCACAAAGTGGAAGAAAGAAAAAACCTTCATAG 1281 44.81 MLSKINSCGHVLVKTVLCLNSDQFLQLDVGCWAIWEDQNKDLHSEQMETVYDGSGEDQRRRRMSPIQFGCRVGVIMRDAPGEVLIACSLYQQGSLDGEADQILAILTGLQVGVELRSGPRFFGVFPVSSSNRLRSIPLDARGGSITSTMGRRSVWVALLVFSLLLSLRPHTVSSTLPLQSLIQGSKDSASESTPEDWNNAHEVHCSRERSRAAWKIIEEYLMPFVEKKKYKISTKCRLHPDNDMFRDQEQHKSHLDFNDWKCGYCRKRFYEEKYLDQHFDNRHYNLLNVSRSRCLADLCGALHCDHVIDTVSQRSKCNPAAAARNKHMCEGLADSCFPVDEGASASHLHEFFLRQFCDAHTCSGKPKPFSRGRQARTSAFYIVISVLTVLFVLFFYVFIYLYRRGMRTQPQVLKRLSQSGRKKKPS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18558860 18564364 + CcPI632755_05g015090.1 Cco05g1509 179137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1509 426 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Cco05g1509 426 PANTHER ZINC FINGER PROTEIN-RELATED 157 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1509 Cco-Chr5:18558860 Cco06g1966 Cco-Chr6:29785685 3.90E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1509 - - - 0.0