Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1538 | ATGGGGAAGAACGAATTTCTAACCCCTAAAGCAATCGCAAACAGAATCAAGGCAAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCCAAAATCCCCATCGTATTGTTGAAGGCTACTCTGAAGAGTTTGAGATTTCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTATAATGAATACATTAACGACAGACATCATATTCATATGAATTCAACTCAGTGGGCTACTCTTACTGAGTTTGTAAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCCGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGTTGAGCCTTTGGAGGCTGAACAAACGAGAGAGTCGAAATTGGATAGTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCAACAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGAAGAGACATATGAGACTGCCAAGGGGAAAGCTAAAGAGACTTCCAAAAACAGGATGGGTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATTATTGGCTTTGTGAGGGAATAACTGTAAAGATTATGAGCAAGGATTTGGCTGAGAACGGATACTATAAACAGAAGGGAGTTGTATGA | 921 | 43.11 | MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFEISFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSVEPLEAEQTRESKLDSGVKLGFALGTSTKLKEKGESSRVVFDEEETYETAKGKAKETSKNRMGGGGLSALEALMREEEMKKEKLNRKDYWLCEGITVKIMSKDLAENGYYKQKGVV | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 19397566 | 19398486 | + | CcPI632755_05g015380.1 | Cco05g1538 | 179166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1538 | 306 | Coils | Coil | 257 | 277 | - | - | |
| Cco05g1538 | 306 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 306 | IPR037321 | GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER) | |
| Cco05g1538 | 306 | SUPERFAMILY | beta-beta-alpha zinc fingers | 26 | 66 | IPR036236 | - | |
| Cco05g1538 | 306 | Gene3D | - | 284 | 306 | - | - | |
| Cco05g1538 | 306 | Coils | Coil | 154 | 183 | - | - | |
| Cco05g1538 | 306 | Pfam | KN17 SH3-like C-terminal domain | 276 | 306 | IPR041330 | - | |
| Cco05g1538 | 306 | Pfam | Domain of Kin17 curved DNA-binding protein | 52 | 177 | IPR019447 | - | |
| Cco05g1538 | 306 | Gene3D | - | 60 | 160 | IPR038254 | - | |
| Cco05g1538 | 306 | FunFam | DNA/RNA-binding protein KIN17, putative | 61 | 160 | - | - | |
| Cco05g1538 | 306 | SMART | Kin17_mid_2 | 52 | 178 | IPR019447 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g1501 | Cco-Chr1:26870265 | Cco05g1538 | Cco-Chr5:19397566 | 6.20E-159 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1538 | K13102 | - | csv:101216499 | 552.747 |