Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g1540 | ATGGGTATCATCATCTCTCTCTTCTCCATCTCTATTTTCATTGTCTTCCTCTTCAGATTCCGACCACACGCCGGCGACTTTTCTACCCACTCTTCCCCTCCGACGTACCCTCTCATCGGCTGTCTCCTCTCCTTCTACATTAACCGCAACCGCCTCTTGGATTGGTACACTCAGCTCTTGTCGGAATCCGCCACCGGCACTATCGTCGTCCACCGCCTCGGCTGCAGGCGTACGGTGGTGACGGTGAACCCGGTTAACGTGGAGTATATTTTGACGACCCATTTCCTTAATTTCCCTAAAGGGAAGCCTTTCACTGAAATCTTGGGTGACTTTCTTGGCTGCGGTATTTTCAACGTCGACGGGGACCAGTGGCGGACGCAGCGGAAGCTGGCTAGTCACGAGTTTAGCGCCAAGTCTCTTCAGGAATTTGTCGTCAAGACGTTGAAGTCGGAGGTCGAGACGCGGTTGTTGCCCGCCCTCGAGGCATCGGCCCACGATGCTGCTGTCGTGGACTTGCAGGAATTACTAAGAGGATTTGCATTCCGAGTGATCTGTAAGATTGTTTTGGGGGGTGAAGAAGAGACAATTTTCGCACTTGAAAAGAGCTTTGGCATAGCGTCGGAGGTGAGCGCCAGGCGAGCGATGGAGCCGGTTTACGTGATATGGAAAATGAAGAGATGGTTTGGGGTTGGATCGGAGCGGCGGCTAAAGACAGCGGTGGTGGAGGTTCACCGGAATGTGATGAACATAATTGACAAAAGAAGGAGGAAGAAGAAGATGGAGGATATCCATGACAGCGAAGATCTCTTGTCCAGGTTGATCTCAATCGGGCATGACGATCAGATGATCCGAGACATGGCCATAAGCTTCATCATGGCGGGTCGAGACACGACATCAGCTGCAATGACATGGCTGTTTTGGCTACTCTCCCATCATCCCAACATAGAGAATCAATTAGTAGAAGAGATAGACTTGGAATCTGAAAAAAAATTGAACTACCAATCTCTGAAGGAGCTCAAATTTCTCAAGGCATGTCTCTGTGAAACCATGAGAATGTATCCACCAGTCCCATGGGATTCCAAGCATGCCATTGCCGACGACTACTTGCCCGACGGGACTCTAGTCCGATCTGGAGATAGAGTGACATATTTCCCCTATGGGATGGGTAGAATGGAGGGTTTGTGGGGGAAGGACCAGGTCGAGTTCAAGCCGAGCCGATGGCTCCTTGAACAAGACGGGCGTGGCAACCAGAGAAGAGGGGTGAAATTGGTTAGTCCATACAAGTTTCCAATATTTCAAGCTGGGCCAAGGGTGTGTTTGGGGAAGGAGATGGCTTTCCTTCAGATGAAGTATGCGGTGGCTTCAATTCTCAGCCAATTCAGAATCAAACCTATTGCCGGCGACCGCCCTGTGTTTATGCCGCTGTTGACGGCGCATATGGCTGGCGGCTTCAAGGTTTTGATTCAAAGGAGAGAGAAAGCGGGCAGAGAAAGAGGCAATTCAACACAAACAAACAAAGTTCCTAATTTAAACAATCAGAAGAAGAGTTGA | 1551 | 50.03 | MGIIISLFSISIFIVFLFRFRPHAGDFSTHSSPPTYPLIGCLLSFYINRNRLLDWYTQLLSESATGTIVVHRLGCRRTVVTVNPVNVEYILTTHFLNFPKGKPFTEILGDFLGCGIFNVDGDQWRTQRKLASHEFSAKSLQEFVVKTLKSEVETRLLPALEASAHDAAVVDLQELLRGFAFRVICKIVLGGEEETIFALEKSFGIASEVSARRAMEPVYVIWKMKRWFGVGSERRLKTAVVEVHRNVMNIIDKRRRKKKMEDIHDSEDLLSRLISIGHDDQMIRDMAISFIMAGRDTTSAAMTWLFWLLSHHPNIENQLVEEIDLESEKKLNYQSLKELKFLKACLCETMRMYPPVPWDSKHAIADDYLPDGTLVRSGDRVTYFPYGMGRMEGLWGKDQVEFKPSRWLLEQDGRGNQRRGVKLVSPYKFPIFQAGPRVCLGKEMAFLQMKYAVASILSQFRIKPIAGDRPVFMPLLTAHMAGGFKVLIQRREKAGRERGNSTQTNKVPNLNNQKKS | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 19408416 | 19412880 | - | CcPI632755_05g015400.1 | Cco05g1540 | 179168 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g1540 | 516 | Pfam | Cytochrome P450 | 32 | 470 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | Gene3D | Cytochrome P450 | 28 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | P450 superfamily signature | 293 | 310 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | P450 superfamily signature | 344 | 355 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | P450 superfamily signature | 439 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PANTHER | CYTOCHROME P450 | 17 | 484 | - | - | |
| Cco05g1540 | 516 | SUPERFAMILY | Cytochrome P450 | 32 | 491 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | CDD | CYP86A | 88 | 484 | - | - | |
| Cco05g1540 | 516 | MobiDBLite | consensus disorder prediction | 492 | 516 | - | - | |
| Cco05g1540 | 516 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | E-class P450 group I signature | 282 | 299 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | E-class P450 group I signature | 302 | 328 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | PRINTS | E-class P450 group I signature | 343 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco05g1540 | 516 | MobiDBLite | consensus disorder prediction | 500 | 516 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g1540 | Cco-Chr5:19408416 | Cco06g1980 | Cco-Chr6:29952874 | 6.00E-162 | dispersed | |
| Cco05g1540 | Cco-Chr5:19408416 | Cco10g1193 | Cco-Chr10:24577506 | 3.50E-85 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g1540 | K20665 | - | csv:101207598 | 852.047 |