Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1540 ATGGGTATCATCATCTCTCTCTTCTCCATCTCTATTTTCATTGTCTTCCTCTTCAGATTCCGACCACACGCCGGCGACTTTTCTACCCACTCTTCCCCTCCGACGTACCCTCTCATCGGCTGTCTCCTCTCCTTCTACATTAACCGCAACCGCCTCTTGGATTGGTACACTCAGCTCTTGTCGGAATCCGCCACCGGCACTATCGTCGTCCACCGCCTCGGCTGCAGGCGTACGGTGGTGACGGTGAACCCGGTTAACGTGGAGTATATTTTGACGACCCATTTCCTTAATTTCCCTAAAGGGAAGCCTTTCACTGAAATCTTGGGTGACTTTCTTGGCTGCGGTATTTTCAACGTCGACGGGGACCAGTGGCGGACGCAGCGGAAGCTGGCTAGTCACGAGTTTAGCGCCAAGTCTCTTCAGGAATTTGTCGTCAAGACGTTGAAGTCGGAGGTCGAGACGCGGTTGTTGCCCGCCCTCGAGGCATCGGCCCACGATGCTGCTGTCGTGGACTTGCAGGAATTACTAAGAGGATTTGCATTCCGAGTGATCTGTAAGATTGTTTTGGGGGGTGAAGAAGAGACAATTTTCGCACTTGAAAAGAGCTTTGGCATAGCGTCGGAGGTGAGCGCCAGGCGAGCGATGGAGCCGGTTTACGTGATATGGAAAATGAAGAGATGGTTTGGGGTTGGATCGGAGCGGCGGCTAAAGACAGCGGTGGTGGAGGTTCACCGGAATGTGATGAACATAATTGACAAAAGAAGGAGGAAGAAGAAGATGGAGGATATCCATGACAGCGAAGATCTCTTGTCCAGGTTGATCTCAATCGGGCATGACGATCAGATGATCCGAGACATGGCCATAAGCTTCATCATGGCGGGTCGAGACACGACATCAGCTGCAATGACATGGCTGTTTTGGCTACTCTCCCATCATCCCAACATAGAGAATCAATTAGTAGAAGAGATAGACTTGGAATCTGAAAAAAAATTGAACTACCAATCTCTGAAGGAGCTCAAATTTCTCAAGGCATGTCTCTGTGAAACCATGAGAATGTATCCACCAGTCCCATGGGATTCCAAGCATGCCATTGCCGACGACTACTTGCCCGACGGGACTCTAGTCCGATCTGGAGATAGAGTGACATATTTCCCCTATGGGATGGGTAGAATGGAGGGTTTGTGGGGGAAGGACCAGGTCGAGTTCAAGCCGAGCCGATGGCTCCTTGAACAAGACGGGCGTGGCAACCAGAGAAGAGGGGTGAAATTGGTTAGTCCATACAAGTTTCCAATATTTCAAGCTGGGCCAAGGGTGTGTTTGGGGAAGGAGATGGCTTTCCTTCAGATGAAGTATGCGGTGGCTTCAATTCTCAGCCAATTCAGAATCAAACCTATTGCCGGCGACCGCCCTGTGTTTATGCCGCTGTTGACGGCGCATATGGCTGGCGGCTTCAAGGTTTTGATTCAAAGGAGAGAGAAAGCGGGCAGAGAAAGAGGCAATTCAACACAAACAAACAAAGTTCCTAATTTAAACAATCAGAAGAAGAGTTGA 1551 50.03 MGIIISLFSISIFIVFLFRFRPHAGDFSTHSSPPTYPLIGCLLSFYINRNRLLDWYTQLLSESATGTIVVHRLGCRRTVVTVNPVNVEYILTTHFLNFPKGKPFTEILGDFLGCGIFNVDGDQWRTQRKLASHEFSAKSLQEFVVKTLKSEVETRLLPALEASAHDAAVVDLQELLRGFAFRVICKIVLGGEEETIFALEKSFGIASEVSARRAMEPVYVIWKMKRWFGVGSERRLKTAVVEVHRNVMNIIDKRRRKKKMEDIHDSEDLLSRLISIGHDDQMIRDMAISFIMAGRDTTSAAMTWLFWLLSHHPNIENQLVEEIDLESEKKLNYQSLKELKFLKACLCETMRMYPPVPWDSKHAIADDYLPDGTLVRSGDRVTYFPYGMGRMEGLWGKDQVEFKPSRWLLEQDGRGNQRRGVKLVSPYKFPIFQAGPRVCLGKEMAFLQMKYAVASILSQFRIKPIAGDRPVFMPLLTAHMAGGFKVLIQRREKAGRERGNSTQTNKVPNLNNQKKS 516
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 19408416 19412880 - CcPI632755_05g015400.1 Cco05g1540 179168
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1540 516 Pfam Cytochrome P450 32 470 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 Gene3D Cytochrome P450 28 500 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PANTHER CYTOCHROME P450 17 484 - -
Cco05g1540 516 SUPERFAMILY Cytochrome P450 32 491 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 CDD CYP86A 88 484 - -
Cco05g1540 516 MobiDBLite consensus disorder prediction 492 516 - -
Cco05g1540 516 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS E-class P450 group I signature 302 328 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 PRINTS E-class P450 group I signature 343 361 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1540 516 MobiDBLite consensus disorder prediction 500 516 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1540 Cco-Chr5:19408416 Cco06g1980 Cco-Chr6:29952874 6.00E-162 dispersed
Cco05g1540 Cco-Chr5:19408416 Cco10g1193 Cco-Chr10:24577506 3.50E-85 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1540 K20665 - csv:101207598 852.047