Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1560 ATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGAGGACTGTCGGCGTATCATCATGCTGACATGTCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGGTTTTAGGGATGAAGACAGAGGTGGATGCGGCGGCGGCGGTGGAAGCGAACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTACAGATGCACGCATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACCAGAGATGAAGGCGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 507 46.55 MFFPCSSGGDGGGGLSAYHHADMSSVSGSDIFGNFHGGDMEVSGVLGMKTEVDAAAAVEANGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19839707 19842294 - CcPI632755_05g015600.1 Cco05g1560 179188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1560 168 Pfam WRKY DNA -binding domain 89 145 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1560 168 ProSiteProfiles WRKY domain profile. 83 148 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1560 168 Gene3D WRKY domain 72 148 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1560 168 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 148 IPR044810 GO:0003700(InterPro)
Cco05g1560 168 SUPERFAMILY WRKY DNA-binding domain 80 147 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1560 168 FunFam WRKY transcription factor 57 74 148 - -
Cco05g1560 168 SMART WRKY_cls 88 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1560 Cco-Chr5:19839707 Cco07g1625 Cco-Chr7:30315596 1.40E-46 dispersed
Cco05g1560 Cco-Chr5:19839707 Cco06g0446 Cco-Chr6:4905637 1.20E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59313 PF03106 WRKY 3.20E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1560 - - - 0.0