Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1567 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAACAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGATGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGAACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.14 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQITIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20047235 20048173 - CcPI632755_05g015670.1 Cco05g1567 179195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1567 312 MobiDBLite consensus disorder prediction 60 83 - -
Cco05g1567 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cco05g1567 312 MobiDBLite consensus disorder prediction 1 17 - -
Cco05g1567 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco05g1567 312 MobiDBLite consensus disorder prediction 1 48 - -
Cco05g1567 312 MobiDBLite consensus disorder prediction 285 312 - -
Cco05g1567 312 Pfam TCP family transcription factor 73 179 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1124 Cco-Chr4:26653565 Cco05g1567 Cco-Chr5:20047235 1.40E-29 dispersed
Cco05g0931 Cco-Chr5:8143444 Cco05g1567 Cco-Chr5:20047235 1.20E-25 dispersed
Cco05g1567 Cco-Chr5:20047235 Cco06g0196 Cco-Chr6:2054896 2.30E-55 dispersed
Cco05g1567 Cco-Chr5:20047235 Cco01g1830 Cco-Chr1:30897842 1.60E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59314 PF03634 TCP 3.70E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1567 - - - 0.0