Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1567 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAACAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGATGGCGAGACCATCCAGTGGTTGCTGCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGAACAGGAACCATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.14 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQITIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20047235 20048173 - CcPI632755_05g015670.1 Cco05g1567 179195

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1567 312 MobiDBLite consensus disorder prediction 60 83 - -
Cco05g1567 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cco05g1567 312 MobiDBLite consensus disorder prediction 1 17 - -
Cco05g1567 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco05g1567 312 MobiDBLite consensus disorder prediction 1 48 - -
Cco05g1567 312 MobiDBLite consensus disorder prediction 285 312 - -
Cco05g1567 312 Pfam TCP family transcription factor 73 179 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1567 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1124 Cco-Chr4:26653565 Cco05g1567 Cco-Chr5:20047235 1.40E-29 dispersed
Cco05g0931 Cco-Chr5:8143444 Cco05g1567 Cco-Chr5:20047235 1.20E-25 dispersed
Cco05g1567 Cco-Chr5:20047235 Cco06g0196 Cco-Chr6:2054896 2.30E-55 dispersed
Cco05g1567 Cco-Chr5:20047235 Cco01g1830 Cco-Chr1:30897842 1.60E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0861 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cco02g1531 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cco06g0018 . 59 343 TCP Transcription Factor Family AT2G45680 53.8 2.5e-66 249.6
Cco05g2708 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.5e-41 165.2
Cco01g1830 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cco11g1390 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cco11g1390 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cco05g1567 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cco02g1531 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cco01g0861 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Cco11g1390 . 147 388 TCP Transcription Factor Family AT1G35560 50.4 1.7e-43 173.7
Cco07g1729 . 43 183 TCP Transcription Factor Family AT3G02150 58.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59314 PF03634 TCP 3.70E-31 No_clan Cco TF