Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1637 ATGGGAGCGAATCTAATGCTCTTCTTCTTCCTCATCCTCTCAGCCATCTCCAGTTTCAGAGCTGATTATGTTCGTCCTCAGCCACGCGAAACCCTGCATTTTCCATGGAATCAGAAATCATCTTCTCAACCCCAACAGGTGCATATCTCCTTAGCAGGAGACAACCATATCAGAGTCACATGGATTACTAATGATCATTCTGCTCCTTCTTTTGTTGAATATGGAACTTATCCAGGAGAATATACTTCTGTTTCTCAAGGAGAGAGCACCTCATATAGTTATATTTTGTACAAGTCAGGAAAGATACATCATACAGTAATTGGACCCTTAAAGCCTGGCACTGTTTATTATTACCGATGTGGAGGGGAAGGTTCCGAGTTCCAGCTGAAGACACCTCCTTCCCAGTTGCCAATTACTTTTTCAGTGGCAGGGGATCTGGGTCAAACTGGATGGACCAAATCAACATTAGAACACATTGATCTATGCAAATATGATGTACATCTTCTTCCAGGTGACCTATCCTATGCCGATTACTTGCAGCATCGGTGGGACACATTTGGTGAGCTTGTGGAGCCACTTGCTAGTGCGAGACCATGGATGGTAACTCAAGGGAACCATGAAAAGGAGGATCTATTGATATTGAAGGCTCCATTTGACTCCTATAATGCAAGATGGAAGATGCCATTTGAGGAGAGTGGATCAACTTCAAATCTCTATTATTCTTTTGAAGTTGCTGGAACTCATGTGATTATGCTTGGATCGTACACTGATTATGACGAGTCCTCAGATCAATATGCATGGTTGAAGGCTGATCTTGCAAAGGTGGACAGGGAAAGAACACCCTGGCTAGTAGTGATATTCCATGTGCCATGGTACAATAGTAATAAAGCTCATCAAGGTGAAGGTGCAGATATGATGACTGCCATGGAGCCGTTGTTATATGCAGCTGGTACGGACCTAGTAATTGCTGGTCATGTCCATGCTTATGAACGCTCGAAACGTGTGAATGCTGGAAAATCTGATCGTTGTGGTGCTGTGCATATCACTATTGGCGATGGAGGAAACCGAGAAGGTTTAGCTCACAAGTACAACTCGCAGCCTGAATGGTCAATTTTTCGGGAAGCTAGTTTCGGTCATGGTGAACTCAAGATAGTAAACTCAACTCATGCCTTTTGGAGTTGGCATAGAAATGATGATGATGAACCAGTAAAGTCTGATCAAGCATGGATAACCTCATTGGTGGCTTCTGGCTGTGTTACTGAGAAGAATCATCAACTGAAGAAGTTCAGATGA 1293 43.31 MGANLMLFFFLILSAISSFRADYVRPQPRETLHFPWNQKSSSQPQQVHISLAGDNHIRVTWITNDHSAPSFVEYGTYPGEYTSVSQGESTSYSYILYKSGKIHHTVIGPLKPGTVYYYRCGGEGSEFQLKTPPSQLPITFSVAGDLGQTGWTKSTLEHIDLCKYDVHLLPGDLSYADYLQHRWDTFGELVEPLASARPWMVTQGNHEKEDLLILKAPFDSYNARWKMPFEESGSTSNLYYSFEVAGTHVIMLGSYTDYDESSDQYAWLKADLAKVDRERTPWLVVIFHVPWYNSNKAHQGEGADMMTAMEPLLYAAGTDLVIAGHVHAYERSKRVNAGKSDRCGAVHITIGDGGNREGLAHKYNSQPEWSIFREASFGHGELKIVNSTHAFWSWHRNDDDEPVKSDQAWITSLVASGCVTEKNHQLKKFR 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22511454 22514076 + CcPI632755_05g016370.1 Cco05g1637 179265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1637 430 SUPERFAMILY Metallo-dependent phosphatases 137 403 IPR029052 -
Cco05g1637 430 Pfam Iron/zinc purple acid phosphatase-like protein C 345 401 IPR025733 -
Cco05g1637 430 Pfam Calcineurin-like phosphoesterase 140 329 IPR004843 GO:0016787(InterPro)
Cco05g1637 430 Gene3D - 135 419 IPR029052 -
Cco05g1637 430 PANTHER ACID PHOSPHATASE RELATED 6 420 IPR039331 GO:0003993(InterPro)
Cco05g1637 430 CDD FN3 42 119 IPR003961 GO:0005515(InterPro)
Cco05g1637 430 CDD MPP_PAPs 137 412 IPR041792 -
Cco05g1637 430 ProSiteProfiles Fibronectin type-III domain profile. 43 145 IPR003961 GO:0005515(InterPro)
Cco05g1637 430 SUPERFAMILY Purple acid phosphatase, N-terminal domain 32 133 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco05g1637 430 Pfam Purple acid Phosphatase, N-terminal domain 44 126 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cco05g1637 430 Gene3D - 43 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1637 K22390 - - csv:101213952 828.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1211 Cco-Chr4:27525276 Cco05g1637 Cco-Chr5:22511454 1.10E-143 dispersed
Cco05g1637 Cco-Chr5:22511454 Cco06g1342 Cco-Chr6:23810194 3.50E-83 dispersed
Cco05g1637 Cco-Chr5:22511454 Cco04g1762 Cco-Chr4:32597385 3.80E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g498 Blo03g00564 . . . . . . . . . Cma01g01134 Cma09g00948 . Car09g00861 . Cpe06g00763 Cpe02g00767 . . . . . . . . . . . . . . . . . . Lsi04g01205 . . . . . . . Bpe11g00545 . . Bma14g00341 . Cmo01g01185 Cmo09g00946 . . . Car16g00545 . . . . . . . . . Cla05g01492 Cam05g1608 . Cco05g1637 Clacu05g1588 Cmu05g1491 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008020 0 1 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36