Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1641 ATGATCATTTACCTAACAATCTTCTGTCTTGTAATCTCCATCTTCCTCTTCCTTCTCACAGGAAAAAAATCATCCCAAAAGCTTCCTCCAGGTTCGCTAGGGTTTCCATTGATCGGGGAGAGCCTGAGCCTCCTCCGCGCCATGCGAAGCAACACCGCAGAAGAATGGGTGGAGAAGAGGATGAGAAAGTACGGGGCGATCTCGAAGCTAAGCCTGTTTGGAAAACCCACCGTGTTGATCGGAGGGAAGAGCGGGAACAAGTTGATTTTCAGCGGCGATGGCGGAGTAATTTCGAATCAGCAAAATGATTCTCTTAGGGCAATTTTGGGAGAAAGCAATTTGTTGGAGCTGAGTGGAGAAGATCACAAGCGTGTGAGGAATGCATTGGCTTCGTTCTTGAAGCCGGAATGTTTGAGGCAATATGTGGGCAAAATGGATGAAGAAATAAGAGGACATATCAAAATGCATTGGCAGGGCAGACATGAGGTTACTGTATTGCCATTGATGAAAACTCTCACCTTCAACATTGTATGTTCTCTTCTGTTTGGTCTTGAGCAAGGTATGAGAAGAGAAAGAATGATAGAATGGTTTCAAGTATTGATAGGCGGAGTATGGTCGATCCCGATAAACTTTCCGTTCACGAGGTACAACCAAAGCCGACGTGCGAGTAGGAGAATCCAAGAGATGCTTAAGGAACTGTTGGATGAAAAGAGAGTTGAATTAGAAGAAAAAGGTGGTTGTTCCTCAAACCAAGATCTAATAACTTGTTTGCTAAGCCTCAGGAATGAAGAAAATGAAGTAATATTGACTGACAAGGAAATTGTGCACAATATTATGTTGGTAATGGTTGCTGGATTTGATACTTCATCGGTTCTTATTACATTCATGATGCGATTTTTGGCTAATAATTCAACTGTTTATTCTGCTGTTCTCCAAGAACAAGAAGAGATATCAAGAAGTAAGAAAAGTGGAGAGTTGCTTACTTGGGAAGATCTTGCTAAGATGAAGTACACATGGAGAGTTGCATTAGAGACCCTAAGGTTGGTGGCACCTATTTTTGGAGGCTTCAGAAAGGCTATGAATGATATTGAATTTGGTGGCTACCTTATCCCTAAAGGATGGCAAATATTCTGGGCATCACCAGTGACTCATTTGGATGACACCATATTTAGAGATCCATTGAAGTTTGACCCAAATAGGTTCGAGAATCAAGCATCAATTCCACCGTATTGCTTCGTTGGATTTGGCGGTGGTCCGAGAATTTGTCCAGGCAATGAGTTTGCAAGGGTTGAGACTCTTGTTACCATCCATTACTTGATCACCCAATTCACATGGAGGCTACTTTTGGATGACCATTTTATCAGGGATCCAATGCCAACGCCTACCAAAGGAATGCCTATCAAAATTTGTCCCAGAGAAACTTCCATGGTATTGTAG 1437 42.45 MIIYLTIFCLVISIFLFLLTGKKSSQKLPPGSLGFPLIGESLSLLRAMRSNTAEEWVEKRMRKYGAISKLSLFGKPTVLIGGKSGNKLIFSGDGGVISNQQNDSLRAILGESNLLELSGEDHKRVRNALASFLKPECLRQYVGKMDEEIRGHIKMHWQGRHEVTVLPLMKTLTFNIVCSLLFGLEQGMRRERMIEWFQVLIGGVWSIPINFPFTRYNQSRRASRRIQEMLKELLDEKRVELEEKGGCSSNQDLITCLLSLRNEENEVILTDKEIVHNIMLVMVAGFDTSSVLITFMMRFLANNSTVYSAVLQEQEEISRSKKSGELLTWEDLAKMKYTWRVALETLRLVAPIFGGFRKAMNDIEFGGYLIPKGWQIFWASPVTHLDDTIFRDPLKFDPNRFENQASIPPYCFVGFGGGPRICPGNEFARVETLVTIHYLITQFTWRLLLDDHFIRDPMPTPTKGMPIKICPRETSMVL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22533115 22537494 + CcPI632755_05g016410.1 Cco05g1641 179269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1641 478 Gene3D Cytochrome P450 19 471 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 FunFam Taxadiene 5-alpha hydroxylase 19 472 - -
Cco05g1641 478 Pfam Cytochrome P450 29 448 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 CDD CYP90-like 60 471 - -
Cco05g1641 478 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 415 424 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco05g1641 478 PRINTS P450 superfamily signature 413 422 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS P450 superfamily signature 422 433 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS P450 superfamily signature 340 351 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS P450 superfamily signature 284 301 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 SUPERFAMILY Cytochrome P450 25 472 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PANTHER CYTOCHROME P450 26 27 454 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Cco05g1641 478 Coils Coil 216 236 - -
Cco05g1641 478 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS E-class P450 group I signature 412 422 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS E-class P450 group I signature 273 290 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS E-class P450 group I signature 422 445 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1641 478 PRINTS E-class P450 group I signature 379 403 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1641 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1641 Cco-Chr5:22533115 Cco06g1606 Cco-Chr6:26629366 7.20E-93 dispersed
Cco10g1299 Cco-Chr10:25917121 Cco05g1641 Cco-Chr5:22533115 1.20E-07 dispersed
Cco05g1641 Cco-Chr5:22533115 Cco05g1643 Cco-Chr5:22601435 3.80E-171 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g493 Blo03g00567 . Bda07g00356 . . Bpe08g01128 . . . . . . . . . . . Bhi09g01888 . . . . . . . . . . . . . . . . . Lsi04g01209 . . . . . . . . . Bma07g01302 . . . . . . . . . . . . . . . . . Cla05g01495 Cam05g1612 . Cco05g1641 Clacu05g1593 Cmu05g1495 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60