Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1643 ATGATCACCATAATCCTCCTTCTCATCACCATCTTCCTCTTCCTCAGATTTAGAACAACATTCTCCTCCTCCGCCGAGAAAAACCTTCCTCCTGGGCCACTTGGGGTCCCATTTATAGGCCAAAGTCTCAGCCTCCTTGGAGCCATGAGAACAAACTCAGCAGAGCAATGGCTGCAGCAAAGAGTGGCTAAGTACGGACCAATTTCGAAGATGACCCTGTTCGGGAAGCCGACGGTGTTTGTACATGGGGCGGCGGCGAACAAGGCAGTGGTGTTTTCAGGGGAGGAGGGGGCGGTGTCGAACCGGCAGATTGAGTCTTTGAAGAGGATTTTGGGAGAGAGGAATTTGACGGAGCTGAGTGGTGAGGATCATAAGAGAGTTAGAGGGGCACTGGTTTGGTTCTTGAGGCCTCAGAGCTTGAAAGGCTTTGTAGGGAAGATGGATGGGGAAGTTAGGAAGCATTTGGACATGTATTGGCATGGCAACAAGGAAGTCACTGTGTCGCCATTGATGAAAACTCTGACTTTTGACATCATATGCTCTCTCCTGTTTGGCATTGAAGAAGGGCCAACAAGAAAGAGCATAATAGAATGCTTCAAAACAATGGTGGATGGCATTTGGTCTGTTCCAATCAACCTGCCATTCACAAGGTATAACCAAAGCCTCAAAGCAAGTGCGAAAGCTCAACAGATATTGAAGCAAATTTTGAAAGACAGGACACAAAACCTGCAAGAAGAAGAGGAAGAAGATGATGATAAAGACCTAATTACTTATTTGTTTAGCATCAAGAACAAACACAAAGAACAAGCTTTGAGTGAGGAGGAAATTGTGCACAATATCATCCTTCTAATGATTGCTGGACATGACACAACATCAATTTTGATTACTCTTATGCTTAGGGTTTTGGCTAAAAACCCAACTGTTTATGCAGCTGTTCTTCAAGAGCATGAAGAAATAGCTATAAACAAAGAAAGTGGGGAGGCACTCACCTGGGAAGATGTTTCCAAGATGAAGTACACATGGAAAGTAGCAATGGAAACCTTGAGACTTTACCCACCTGTATTTGGAGGGTTTAGAGTGGCCCTTAAAGACATTCAATTAGGAGGATACACGATTCCAAAAGGATGGCAAATATTTTGGGCAGCACCAATGACCCATCTGGATGAGAAAATATTTGGAGACCCACAAAAGTTTGAACCAAGTAGATTTGATCAAAACCAAACACCAATCCCACCCTTTTCCTTCATTGCATTTGGTGGAGGACCCAGAATTTGCCCTGGCTATGAGTTTGCAAAGCTTGAAACTCTTGTCACTGTTCATTACCTAATCACTCAATTCACTTGGAAGCTCACTTCAGAAGATTTCTTAATTAGAGATCCAACTTTGACCCCCAACAAAGGGCTCCCCATCCAAATTTATCCCAAATTATAA 1431 43.68 MITIILLLITIFLFLRFRTTFSSSAEKNLPPGPLGVPFIGQSLSLLGAMRTNSAEQWLQQRVAKYGPISKMTLFGKPTVFVHGAAANKAVVFSGEEGAVSNRQIESLKRILGERNLTELSGEDHKRVRGALVWFLRPQSLKGFVGKMDGEVRKHLDMYWHGNKEVTVSPLMKTLTFDIICSLLFGIEEGPTRKSIIECFKTMVDGIWSVPINLPFTRYNQSLKASAKAQQILKQILKDRTQNLQEEEEEDDDKDLITYLFSIKNKHKEQALSEEEIVHNIILLMIAGHDTTSILITLMLRVLAKNPTVYAAVLQEHEEIAINKESGEALTWEDVSKMKYTWKVAMETLRLYPPVFGGFRVALKDIQLGGYTIPKGWQIFWAAPMTHLDEKIFGDPQKFEPSRFDQNQTPIPPFSFIAFGGGPRICPGYEFAKLETLVTVHYLITQFTWKLTSEDFLIRDPTLTPNKGLPIQIYPKL 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22601435 22605459 + CcPI632755_05g016430.1 Cco05g1643 179271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1643 476 SUPERFAMILY Cytochrome P450 26 474 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 Pfam Cytochrome P450 30 457 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS P450 superfamily signature 342 353 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS P450 superfamily signature 425 436 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS P450 superfamily signature 286 303 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS P450 superfamily signature 416 425 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PANTHER CYTOCHROME P450 26 28 450 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Cco05g1643 476 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 418 427 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Cco05g1643 476 Gene3D Cytochrome P450 19 474 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 Coils Coil 226 249 - -
Cco05g1643 476 CDD CYP90-like 61 474 - -
Cco05g1643 476 PRINTS E-class P450 group I signature 275 292 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS E-class P450 group I signature 295 321 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS E-class P450 group I signature 381 405 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS E-class P450 group I signature 415 425 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS E-class P450 group I signature 425 448 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Cco05g1643 476 FunFam Taxadiene 5-alpha hydroxylase 20 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1643 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1643 Cco-Chr5:22601435 Cco09g2432 Cco-Chr9:38544503 3.40E-87 dispersed
Cco05g1641 Cco-Chr5:22533115 Cco05g1643 Cco-Chr5:22601435 3.80E-171 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g491 . Blo03g01447 Bda07g00354 Bda09g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01210 . . . . . . . . . Bma07g01303 . . . . . . . . Cpe14g00747 . . . . . . . . Cla05g01497 Cam05g1614 . Cco05g1643 Clacu05g1597 Cmu05g1496 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002151 6 2 2 2 2 2 1 2 2 2 2 2 1 1 2 1 2 1 1 2 2 5 1 3 2 2 1 2 1 3 60