Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1645 ATGACATCAATGGCTTCTTCTTCTTCTTCGTCTAAATCCTTTTGTTCTTTCATTCCCAGAACTATTCTTCTTGTCTCCATCGTGGGGTTTCTTCTCTCATCCCAACCACAGGCCCTGAAATCACCGTTTTCCCCTATCGACGTGCTTCCACTGCTACCCAGACAGGTTTCATGGCCGATTCTCAACTATCTCAACAACGCCGCTGATCTTCTTCCGACTTTCGTCGGAGCTGTCTCCTCTCCTGAGAACGCTATTCAGTGGCAAGGGGCTTGCTTCTATAAGAACACCGCTTGGCTTGAATTTCATAACAATTCTGGCACCCAATTTGGCGGTGGTACCCTTCATATAAAGGCTAGCGATGCACATAGTTGGACGTGTATGGATCTTTATATATTTGCAACTCCATACCGCATAACATGGGACTACTATTTCCTGTCCAGAGAACATACTCTTGAGTTTGCAGAATGGGAAGGAAAAGAAGAATTTGAATACGTTAAAAAGGCAGGGGTTTCAATTTTCCTCTTGCAAGCTGGAATTTTGAAAACCCTTCAAGCATTGTTTGATGTCCTCCCTTTGTTTGCAACTTCTGACTGGGGTGAGCAATCTAATATTAAATTTCTCGAGAATCACATGGGTACTACTTTTGAGGAACGTCGGCGTCCATGGATTACTACTGTTGATGTTGATGATATTCACTCTGGAGATTTTTTAGCACTATCCAAAATTCGTGGTCCATGGGGTGCTTTTGAGACTCTACAGAAGTGGGTTACTGGATCATATGCCGGTCATTCTGCTGTTTTCTTAAGGGACTCTGAAGGAAAGTTGTGGGTTGCTGAATCTGGGCGTGGAAATGGAGTGGAGGATGATATTATCGATGTTTTACCATGGGATAAGTGGTGGGACTACACACTCAACAACGACTCATCCAATCCACACGTTGCATTTCTTCCCTTGCATCCTGATTTGCGGGCAAAGTTTAATGAGACTGCTGCATGGGAGTATGCCAGGAGCATGGTTGGGAAACCATATGGTTATCATAACTTGATATTTAGTTGGATTGACACCACGCATGGAAACTATCCACCGCCCTTGGATGCCCATTTGGTTGCTTCTGTTATGACAATATGGACACGAGTGAGGCCAACCCTTGCGGCAAACTTGTGGAATGAAGCTTTGAACATACGACTTGGGACAAAGGGCCTTGACCTTCCTGAGATTCTAGTTGAAGTTGAAAAGCAAGGATCATCTTTTGGCGAACTACTAGCTATTCCTGAACAGGATGACTGGATCTATACCGACGGTTTATCAGCATCATGTGTTGCTTTTATCCTTGAAATGTACAAGGCGGCTGGGCTTTTTGGTCCACTTGCTAGCTCAATTCAAGTCACAGAGTTCACAATTAAAGATGCATACACTCTCAACTTTTATGAAAACAATTCAAGCCGCCTTCCAAAGTGGTGTAATAGTGGGGACAATGTCAAGCTTCCATATTGCCAGATTCTTGGAAAGTATCGGATGGATTTACATGGATATAATAGCATTGATCCCTATGAACATATGAATGAAAGGTCACCTCATGGCATGGAGAAGAAGGGCAAGAAGCTGGCCTATAAAGGGAGTCCCAATGGCTATAGACCCAAGTTGGAGCTACAACTTGTGTACCACAACGTCGGGAGAGGGGCTTCTCGTGATGCCACTTGTATGCTTCTCCCGATGATTGTTTACGATCCAACATCAAGAGAAGTTTCTCCTGATAATTTTTTTAGCGTTAGTGCCATACAATAA 1785 43.75 MTSMASSSSSSKSFCSFIPRTILLVSIVGFLLSSQPQALKSPFSPIDVLPLLPRQVSWPILNYLNNAADLLPTFVGAVSSPENAIQWQGACFYKNTAWLEFHNNSGTQFGGGTLHIKASDAHSWTCMDLYIFATPYRITWDYYFLSREHTLEFAEWEGKEEFEYVKKAGVSIFLLQAGILKTLQALFDVLPLFATSDWGEQSNIKFLENHMGTTFEERRRPWITTVDVDDIHSGDFLALSKIRGPWGAFETLQKWVTGSYAGHSAVFLRDSEGKLWVAESGRGNGVEDDIIDVLPWDKWWDYTLNNDSSNPHVAFLPLHPDLRAKFNETAAWEYARSMVGKPYGYHNLIFSWIDTTHGNYPPPLDAHLVASVMTIWTRVRPTLAANLWNEALNIRLGTKGLDLPEILVEVEKQGSSFGELLAIPEQDDWIYTDGLSASCVAFILEMYKAAGLFGPLASSIQVTEFTIKDAYTLNFYENNSSRLPKWCNSGDNVKLPYCQILGKYRMDLHGYNSIDPYEHMNERSPHGMEKKGKKLAYKGSPNGYRPKLELQLVYHNVGRGASRDATCMLLPMIVYDPTSREVSPDNFFSVSAIQ 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22649748 22658118 - CcPI632755_05g016450.1 Cco05g1645 179273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1645 594 PANTHER OS01G0793500 PROTEIN 21 526 - -
Cco05g1645 594 Gene3D endopeptidase domain like (from Nostoc punctiforme) 230 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1645 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1645 Cco-Chr5:22649748 Cco05g2761 Cco-Chr5:35460735 1.50E-193 dispersed
Cco05g1644 Cco-Chr5:22642406 Cco05g1645 Cco-Chr5:22649748 5.80E-245 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g487 . Blo03g01446 . Bda09g00394 . . . . . . . Cma09g00943 . Car09g00857 . . . . . . . . . . . . . . . . . . . Cone14ag1138 Cone15ag1156 Lsi04g01215 . . . . . . . . . . . . . Cmo09g00941 . . . . . . . . . . . . . Cla05g01499 Cam05g1617 . Cco05g1645 Clacu05g1601 Cmu05g1498 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000656 4 3 3 2 4 4 4 3 3 3 2 3 5 3 3 6 3 5 4 3 3 3 2 2 4 3 1 4 2 3 97