Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1659 ATGATCTCTGCTGTGAAACAGTCTTCTAGGGGTATCCATTGCTCTGATGGTATTATTCGGAGCAAAATCTCGGTTCCCTCTCAGCGATCCTCGTTTCTTCCGCCTCTTCCTGTGCAAAAACCTCGAAACTCCGCTGTTTCTTTTCATAAGGCTGTACATGTTTCTTCGCTTGAGAATTTTGGATCACTTCGGGTTCGTAAAGCTAATCTGATCAAATGTGAAGCTTACGAGGCTGAACGATCGCAGCCGATCGAATCGAGCATTGAGTTGCCGAAAAGTCAGGTCCCTTCTGAGGCCGCGAAGAAGTTGAAAATTGGATCCTACTTCGCTCTTTGGTGGGCTTTGAACGTGGTTTTCAATATCTATAACAAGAAGGTGTTGAACGCTTACCCATATCCATGGCTGACCTCGACTCTGTCGCTTGCCGCTGGATCTCTGATCATGTTGATCTCATGGATGACGAGAATTGCCGAGGCTCCCAAAACCGACTTCGAGTTTTGGAAGTCTTTGTTCCCTGTTGCTGTTGCCCATACAATTGGACATGTTGCTGCAACCGTGAGCATGTCCAAGGTTGCAGTTTCATTCACTCACATCATCAAGAGTGGTGAACCTGCTTTTAGCGTATTGGTTTCAAGGTTCTTGTTGGGTGAAACCTTCCCACTTCCTGTTTACTTGTCGCTCCTCCCGATCATTGGTGGGTGTGCTCTCGCTGCTGTGACCGAGCTCAACTTTAACATGACGGGTTTCATGGGTGCCATGATATCAAACTTGGCATTTGTATTCCGTAACATATTTTCGAAGAGAGGCATGAAAGGAAAATCTGTTAGCGGGATGAACTACTATGCATGTTTATCAATTTTGTCTTTGTTACTCTTGACGCCATTTGCATTTGCTGTGGAGGGACCAGAATTGTGGGCTGCTGGATGGCAAACAGCAGTTTCTCAAATTGGACCTCATTTCGTTTGGTGGGTTGCAGCACAAAGTATATTCTACCATCTCTATAATCAGGTGTCTTACATGTCCTTGGATGAGATTTCTCCCTTGACATTTAGCATTGGAAACACCATGAAACGTATATCAGTCATAGTTTCTTCCATCATCATCTTCCGAACACCTGTGCAGCCAGTCAACGCTCTCGGAGCTGCCATTGCAGTTCTTGGAACCTTCATATATTCTCAGGCAAAGCAATGA 1191 45.34 MISAVKQSSRGIHCSDGIIRSKISVPSQRSSFLPPLPVQKPRNSAVSFHKAVHVSSLENFGSLRVRKANLIKCEAYEAERSQPIESSIELPKSQVPSEAAKKLKIGSYFALWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLIMLISWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKRGMKGKSVSGMNYYACLSILSLLLLTPFAFAVEGPELWAAGWQTAVSQIGPHFVWWVAAQSIFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAVLGTFIYSQAKQ 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23174210 23177243 - CcPI632755_05g016590.1 Cco05g1659 179287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1659 396 PANTHER SOLUTE CARRIER FAMILY 35 99 395 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Cco05g1659 396 Pfam Triose-phosphate Transporter family 103 392 IPR004853 -
Cco05g1659 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 103 395 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco05g1659 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1994 Cco-Chr4:34114037 Cco05g1659 Cco-Chr5:23174210 1.20E-154 dispersed
Cco05g0293 Cco-Chr5:2349812 Cco05g1659 Cco-Chr5:23174210 4.30E-86 dispersed
Cco05g1659 Cco-Chr5:23174210 Cco05g2643 Cco-Chr5:34550158 5.40E-62 dispersed
Cco05g1659 Cco-Chr5:23174210 Cco10g0522 Cco-Chr10:6216407 3.30E-184 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1659 K15283 - csv:101220046 724.931