Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1662 ATGGCAAGTAACAACCTAGAAAGCAATAATGAAGATGTTGGTTCTCGTCACACTCCCTACTCTCCTCAATGTTCCTCCAACTTTCCCCTCTTGGATAATTCAGCAGCATCATCAAACTCCAATGCAAGAAGTAGTAACAATGATCACCTCCATAGAGCAAGTGACCTTCTCATGGCGGTCTCGGTTTGCACGGAGGTTAACCGATTGAGAATCGCCGAGCTCGCCGACGCGGCCATGGACGAGCTCACAAATGCAGCCCTTGATGGAGATCCTCTATGGAAGCCACAAGAAGATGAAGACCAAGCTGAATCTTATTATACATTGATGGATATAATGAAAATGGTTGAGGTTGGTGAGACTCATTGTAGTGATCTTTTAGATCTTGAAATTGGCAACACCAAAGCAGATAGTGATAATCAATGTCATTCCAACACAAATTTTGGTCCTAAAGACAAACAACAAGAACAACAGCATCTTCAAACTGAATTTTCAAGACAAATTGCATATGTCAGAATGGAGCCACTCAGAATTGTTGGGTTTTTTATGGATTTGGAACAATGGACTCTTGTCTTCTCTGATATTGTTTCAAGAGCAGCAATTCTTCAAACTTGGTCATCAATGGGACCTGTTGGAGGGGACTACAATGGAACTTTGCAAGTGATGACAGCTGAGTTTCAGATCCCCACACCACTTGTTGAGACAAGAGAAAGTTACTTTGGGAGGTTTTGTAAACAATTAGCTCCATATACATGGGGAATTGTTGATGTTTCCTTGGAAGATCTCTTCCCTTATCCATCTGTTGGGTATAGAAGAAAACCTTCTGGCTGTTTAATCCAAGCATCTCCGAATGGTCTCTCCAAGGTGATATGGGTTGAGCATGTGGAAGTTGACCAAAGAATAATGGTTCATAAAATGTATGAAGCATACATCAATTCAGGATTGGCATTTGGTGCAAAGCGATGGGTTTCTTCTTTGGTTAGACATTGCACTTGGGAAGCTACTTTAATGGCTAAGAGCTGTTCAACACTCAATGGAGTATTACTATTACAAGCTGGAAGGTTAAGTGTGTTGAAGTTGGCTGAGAGAATGACAAAGAGCTTCTATAGAAATGTGAGTGCTTCTAAAGCAAAGCCATGGATTAAAATTCCCTTTCCTGGACCTCAAGACATTAGGGTTATGGTGACACCAAAACCCACTGATGATCCTGGAAGACCTCCATGTGCCTCGGTGGTTTTCGCGACTTCTGTTCACGTTCCGACCAACCCAAACCATCTTTTCCATTACCTTCGTCACGAGAAGTCTCGAAACAAGTGGGACATCCTTTCATATGGTCATGTCATTACAGAACTTTCTTGCATCATCAATGGTATCGATTCAAGAAACCGAGTGTCGATAATTCAAGTGAACTCAGCACCAAGACGAATTGAGATCTTTTACCTGCAAGAAAGTTTCTATGACGCATCAGGATCCTACATAGTCTTTGCACCTGTTGATATCTACGCAATGGCGGTGGTCTTACGTGGAGGAAACCCGGATTATGTGGCTATCTTGCCTTCTGGCTTTGCAGTCCTTCCAGATAGACCAAGAGTGAACGGAGAGGAAGATGTAGCTGATGGAAGTATTCTAACAGTTGCTCTCAACATCATTGATCATGCAGTAACTGAAAGAGTCCCTTTTCAATCAATGGTTTCCATGCATAGGATTATGAATGAAACTGTTGCCTCAATCAAAGAGGCTTTCAAGATTCAACAATTTTAA 1758 41.87 MASNNLESNNEDVGSRHTPYSPQCSSNFPLLDNSAASSNSNARSSNNDHLHRASDLLMAVSVCTEVNRLRIAELADAAMDELTNAALDGDPLWKPQEDEDQAESYYTLMDIMKMVEVGETHCSDLLDLEIGNTKADSDNQCHSNTNFGPKDKQQEQQHLQTEFSRQIAYVRMEPLRIVGFFMDLEQWTLVFSDIVSRAAILQTWSSMGPVGGDYNGTLQVMTAEFQIPTPLVETRESYFGRFCKQLAPYTWGIVDVSLEDLFPYPSVGYRRKPSGCLIQASPNGLSKVIWVEHVEVDQRIMVHKMYEAYINSGLAFGAKRWVSSLVRHCTWEATLMAKSCSTLNGVLLLQAGRLSVLKLAERMTKSFYRNVSASKAKPWIKIPFPGPQDIRVMVTPKPTDDPGRPPCASVVFATSVHVPTNPNHLFHYLRHEKSRNKWDILSYGHVITELSCIINGIDSRNRVSIIQVNSAPRRIEIFYLQESFYDASGSYIVFAPVDIYAMAVVLRGGNPDYVAILPSGFAVLPDRPRVNGEEDVADGSILTVALNIIDHAVTERVPFQSMVSMHRIMNETVASIKEAFKIQQF 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23252715 23258621 - CcPI632755_05g016620.1 Cco05g1662 179290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1662 585 MobiDBLite consensus disorder prediction 1 47 - -
Cco05g1662 585 ProSiteProfiles START domain profile. 64 334 IPR002913 GO:0008289(InterPro)
Cco05g1662 585 Pfam START domain 159 329 IPR002913 GO:0008289(InterPro)
Cco05g1662 585 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 581 IPR042160 -
Cco05g1662 585 CDD START_ArGLABRA2_like 70 329 - -
Cco05g1662 585 MobiDBLite consensus disorder prediction 135 158 - -
Cco05g1662 585 SMART START_1 127 331 IPR002913 GO:0008289(InterPro)
Cco05g1662 585 SUPERFAMILY Bet v1-like 352 527 - -
Cco05g1662 585 SUPERFAMILY Bet v1-like 70 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1662 K09338 - - csv:101212560 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1662 Cco-Chr5:23252715 Cco06g0006 Cco-Chr6:87865 1.00E-77 dispersed
Cco02g0929 Cco-Chr2:11258484 Cco05g1662 Cco-Chr5:23252715 3.00E-109 wgd
Cco03g0485 Cco-Chr3:5088180 Cco05g1662 Cco-Chr5:23252715 5.10E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g464 . . . . . . . . . . Cma01g01144 . . . . . Cpe02g00755 . . . . . . . . . . . . . . . . . . Lsi04g01227 . . . . . . . . . . . . Cmo01g01197 . . . . Car16g00556 . . . . . . . . . Cla05g01515 Cam05g1629 Cec05g1633 Cco05g1662 Clacu05g1614 Cmu05g1514 . . . . Cme04g00844
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013609 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 25