Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1669 ATGACATGGCACCTTCGGCGTTTTAAACGCACCGTTTCAATCGCTAGAGCAGTGCCGTATTCCTCTTTCACACCTCCAATTCCATTGAAGGGATTATCTCCGCCGTCGCCATCGCCGTCTCCGTCCTATTTCCACCGCCCTCTTCCGGAGTTTCAGAGAGAGAGAAGATCCATCAACATGATCACCCGAACAGTATTTACTGCTTTGAAGAGATCGATTCTTCCATTGCCTTCTTCTCAATTACTCCTGCTCTTCTCCTCCTCCGCTTGTCGATCTGCTAGCACGTTGGTTTTGGCGGAACACGATGGCGGTTCCATCAATGCCGCTTCCGTTAGTGCTATAACGGCTGCCGGTTCTTTGAGCAAAGACAGTTCGATTTCCGTCCTGTTGGCTGGCTCAGGGCCTTCGCTTCTGGAAGCTGCCGAACATGCTGCCTCTTGCCACCCATCTATTTCTCAGGTGCTTGTTGCTGATTCCGATAAATTTACATACCCTTTGGCAGAACCTTGGGCTCAATTAGTTCAATTGGTTCAACAGAAGAATGGATATTCTCATGTAATTGCAGCTTCAGGTTCCTTTGGGAAAAACATTCTTCCACGCGCTGCCGCTCTTTTAGATGTTTCTCCAGTTACTGATGTCGTCGCTATAACTGAATCTCGCCAATTCTTGAGGCCTATGTATGCTGGCAATGCGCTTTGTACAGTTAGATACACAGGGGCTGACCCTTGTATGTTGACCATAAGATCTACATCATTCCCAGTGACCTCAAAATCAGTTGAGTCGGCATCATCCAGGTCCCCTATATCTCAGGTTGATCTCTCAACGTTTGGTGGAGATTCTATTGGAAAATCTAGATTTGTAAAGCAAACATCTCAGGAAGCAGAATGTCCTGATCTTGCTAATGCACGGGTTGTTGTCACTGGAGGACGTGGTTTGAAAAGTGCTGAGAACTTCAAAATGATTGAGAAACTTGCAGGGAAACTTGGTGCCGCAGTTGGTGCCACACGTGCTGCTGTCGATGCTGGATTTGTTCCCAATGACCTTCAGGTTGGACAAACTGGTAAAATTGTAGCACCAGAACTATATATTGCTTTTGGTGTATCAGGAGCCATTCAACATTTGGCAGGGATCAGAGACTCTAAGGTTATTGTGGCTGTGAATAAAGATGCAGATGCACCAATATTTAAGGTTGCTGACTATGGACTCGTTGGCGATCTTTTTGAGATTATACCGGAGTTGCTTGAAAAGCTACCTGAAAGTAAATAA 1266 46.05 MTWHLRRFKRTVSIARAVPYSSFTPPIPLKGLSPPSPSPSPSYFHRPLPEFQRERRSINMITRTVFTALKRSILPLPSSQLLLLFSSSACRSASTLVLAEHDGGSINAASVSAITAAGSLSKDSSISVLLAGSGPSLLEAAEHAASCHPSISQVLVADSDKFTYPLAEPWAQLVQLVQQKNGYSHVIAASGSFGKNILPRAAALLDVSPVTDVVAITESRQFLRPMYAGNALCTVRYTGADPCMLTIRSTSFPVTSKSVESASSRSPISQVDLSTFGGDSIGKSRFVKQTSQEAECPDLANARVVVTGGRGLKSAENFKMIEKLAGKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYIAFGVSGAIQHLAGIRDSKVIVAVNKDADAPIFKVADYGLVGDLFEIIPELLEKLPESK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23448148 23451831 - CcPI632755_05g016690.1 Cco05g1669 179297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1669 421 Pfam Electron transfer flavoprotein domain 95 273 IPR014730 -
Cco05g1669 421 FunFam Electron transfer flavoprotein, alpha subunit 292 420 - -
Cco05g1669 421 SMART ETF_2 95 280 IPR014730 -
Cco05g1669 421 Pfam Electron transfer flavoprotein FAD-binding domain 298 378 IPR014731 -
Cco05g1669 421 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 86 418 IPR001308 GO:0005739(PANTHER)|GO:0009055(PANTHER)|GO:0009055(InterPro)|GO:0033539(PANTHER)|GO:0050660(PANTHER)|GO:0050660(InterPro)
Cco05g1669 421 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 94 261 - -
Cco05g1669 421 Gene3D HUPs 94 281 IPR014729 -
Cco05g1669 421 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 361 387 IPR018206 -
Cco05g1669 421 SUPERFAMILY DHS-like NAD/FAD-binding domain 296 417 IPR029035 -
Cco05g1669 421 CDD ETF_alpha 94 272 IPR033947 -
Cco05g1669 421 FunFam Electron transfer flavoprotein subunit alpha, mitochondrial 94 290 - -
Cco05g1669 421 Gene3D - 292 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1669 K03522 - - csv:101217942 567.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32