Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1671 ATGGGTAAATTAGGGTTTGCGTTTGGGGGTTTGATTTGTGCGATGATGTTATTGCAGAAAAGTGAGGGCACTGAGTTCATAGTTGGAGGAGCAAAGGGATGGGATGTTTCGGTGGCAAAAAGCTATAATCAATGGGCAGAAGCAAGCAGGTTTCAAATTGGAGACTCTTTAGTTTTCAACTATGATGCTGGCCAAGACTCAGTGCTTCAAGTAACCCAAGATGACTACACCAATTGCAACATCCAATCTCCAATTAAACACTATTCTGATGGCCATTCTGTTTTCCAATTTGACAAATCTGGGCCTTACTATTTTGTCAGTGGAAACAAAGACAATTGCCTTAAAAATGAGAAGCTTGTGGTGATTGTGTTGGCTGATAGAAGCAATTCGAGTTCTAATCAAACCACCACTTCTCCTCCAATCTCTGCTCCATCTCCATCTCCCACAAATTCATCTGAGACAACACCTTCTCCTGCACCAGCAAATGATCAAACTAGTGCACCTTCTCCTCCTCCGTCGGGGTCAGCTGAATTCAACCCATCTCCGCCACCTGCTGAAGTCAATCCCTCAACCCCACCTACTGGTGAAGAGTCTCCATCTCCCTCTGCAGGGACGGTTGAGATTAACCCTGCACCTCCTGTATCAGGGCCACCACCCAGTTTCGGATATTCGATCATCCCGGGTAGTATTGGCTCCATTGGAGCGTTTGTTGCTGCTGTTATCTTAGGTTTCTAA 735 45.58 MGKLGFAFGGLICAMMLLQKSEGTEFIVGGAKGWDVSVAKSYNQWAEASRFQIGDSLVFNYDAGQDSVLQVTQDDYTNCNIQSPIKHYSDGHSVFQFDKSGPYYFVSGNKDNCLKNEKLVVIVLADRSNSSSNQTTTSPPISAPSPSPTNSSETTPSPAPANDQTSAPSPPPSGSAEFNPSPPPAEVNPSTPPTGEESPSPSAGTVEINPAPPVSGPPPSFGYSIIPGSIGSIGAFVAAVILGF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23476241 23478057 - CcPI632755_05g016710.1 Cco05g1671 179299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1671 244 MobiDBLite consensus disorder prediction 128 222 - -
Cco05g1671 244 MobiDBLite consensus disorder prediction 163 196 - -
Cco05g1671 244 PANTHER BLUE COPPER PROTEIN 19 153 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco05g1671 244 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Cco05g1671 244 PRINTS Proline rich extensin signature 156 172 - -
Cco05g1671 244 PRINTS Proline rich extensin signature 192 213 - -
Cco05g1671 244 PRINTS Proline rich extensin signature 138 150 - -
Cco05g1671 244 PRINTS Proline rich extensin signature 180 192 - -
Cco05g1671 244 Pfam Plastocyanin-like domain 34 115 IPR003245 GO:0009055(InterPro)
Cco05g1671 244 Gene3D - 24 137 IPR008972 -
Cco05g1671 244 MobiDBLite consensus disorder prediction 147 162 - -
Cco05g1671 244 CDD OsENODL1_like 24 124 IPR041846 -
Cco05g1671 244 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055(InterPro)
Cco05g1671 244 FunFam Early nodulin-like protein 1 23 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1671 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1671 Cco-Chr5:23476241 Cco10g0526 Cco-Chr10:6272223 6.50E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g460 . . Bda07g00343 . . . . . Cmo16g00907 Cmo04g01014 Cma01g01146 . . . Sed04g3189 . . Bhi09g01933 Tan01g4518 Cmetu04g2832 . Hepe01g1302 Mch11g1162 . Cla10g00524 Cam10g0519 Cec10g0536 Cco10g0526 Clacu10g0541 Cmu10g1367 Cre10g0769 . . . . Lsi04g01232 Csa03g00531 Chy04g00987 Cme06g02276 . . . . . . . . Sed07g1925 Cmo01g01199 . Cma04g00944 Cma16g00852 Car04g00882 Car16g00852 . . Bhi11g00646 Tan01g1683 Cmetu06g0869 . . Mch10g1234 . Cla05g01522 Cam05g1635 Cec05g1638 Cco05g1671 Clacu05g1624 Cmu05g1522 . Lsi05g00619 . Chy06g01800 Cme04g00836
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco02g2423 . 45 263 Phytocyanin Superfamily AT1G08500 56.8 5.7e-64 241.1
Cco03g1459 . 29 140 Phytocyanin Superfamily AT2G27035 58.9 4.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51