Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1672 ATGCATGTTTGCTGCAAGAAAGACCCAAAATTCAAGCAAAAACCACCAAAGAAGACCAAGTTTTTACCTCGACAAAACGGCGATCTCTCGCTCACCTACGACGTCATCCAAGCTTATGGGAACAACTATCTTGCACAAGTCACCATTGACAACAACAACCATCTCGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTACACTCACAAAATTGACTACTCTGACTGCATCTTTGGCCCTCAAGGCCAATACTATCAAGATTTTGACTTCTTCCAAATCATGAATTGTGAGAAGAACCCCATCATCGCCGACCTCCCTTCCGATCGAGCCAACGATTCCAAGGTCGGAAAGTTACCCTTCTGTTGCAACAACGGCACCATCTTACCGCCACTGATGGATCAAAGCAAAGCAAGGTCCATTTTTCAGCTCCAAGTCTATAAGCTTCCCCCCGACTTCAACAGAACAGCCTTGTACCCTCCTCAAAAATGGAAGATCAACGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGATCCAACACAATTTCCTGACCCAACTGGACTTCAATCCATAACCACAGCCATTGCAAGTTGGCAAGTGGTTTGCAATATTTTTACTCCAAAACCCAAACAATCAAGATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATCAAACTCAAACTTGCAACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAGGCCCTTTTAGTTCCATTTGACAATAGAACTCTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCAATTCCAAAGAAACTCCCTTGTCCTGACAATTGTGGGGTTAGTTTAAATTGGCATATAAACTCAGATTATAACAGTGGTTGGACGGCTAGAATTACCCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGCTATGAGAATGTCTACTCTTTCAATGGGACTAAACTCCCACCAGATATGATCAAGAACACCATCTTTTTCCAAGGATTGGAAGGTCTTAATTACCTGATGGGGGAGATGAATGGGACGGACCCGAGATTCGATCCGCGAGTACCAGGAAAGCAACAATCGGTAATCTCTTTCACTAAGAAGAATTTGAGGAACCTCAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAATGTGCACTTCCTCCTCATATTCCTTTAGGAAATGGTGCTGCTCACAGCCTCCATGTCAGCTCTGAACCTTTAATGCAGCTGCTCACAGTTATGGCTTTTTTCATTCTCTTCGTCGATGGCTTTCATTGA 1428 42.86 MHVCCKKDPKFKQKPPKKTKFLPRQNGDLSLTYDVIQAYGNNYLAQVTIDNNNHLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDYSDCIFGPQGQYYQDFDFFQIMNCEKNPIIADLPSDRANDSKVGKLPFCCNNGTILPPLMDQSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVDPTQFPDPTGLQSITTAIASWQVVCNIFTPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDQTQTCNPNSSPLLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKKLPCPDNCGVSLNWHINSDYNSGWTARITLFNWEEYPFEDWFAAVQLDKAAKGYENVYSFNGTKLPPDMIKNTIFFQGLEGLNYLMGEMNGTDPRFDPRVPGKQQSVISFTKKNLRNLNIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSEPLMQLLTVMAFFILFVDGFH 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23496507 23497934 - CcPI632755_05g016720.1 Cco05g1672 179300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1672 475 Pfam COBRA-like protein 43 221 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cco05g1672 475 PANTHER COBRA-LIKE PROTEIN 7 1 466 - -
Cco05g1672 475 PIRSF COBRA 21 472 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1672 Cco-Chr5:23496507 Cco10g0528 Cco-Chr10:6301955 5.40E-226 dispersed
Cco05g1672 Cco-Chr5:23496507 Cco06g1747 Cco-Chr6:27963746 1.50E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1672 - - - 0.0