Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1687 AATGGAGCAGAGAATATCCCGTATCTTATATATAATTATGCTGTCAGCATTCCAAATTTAGCGATTGAGGATACGGTTTCAAAGTTCAAGAGCATGCACTTTAAGTTAGATATCAATCCTTCATCTGCTTCATATGAGAAGCTCATCTGTTATTGTTGTGGTTCACTTAAGGTTCACATGGCCCTTGATATAGCAAATGAAATGTGTGATGCAGATTTCAAACTATCAATAGATGTCTTGCACTCCATTTTACATGCTTTGGATGAAGGCTATGAATTTAATTTGGTTCATCAAGTGTATTCACTCATATGTCGCCACAACTTGGAGCCAGATAGTGAAACCTTCAGGGGCATGATAAGTCTGTTTGTAAAGATGAAAGATTTTCAAAGTGCCTATGACATGATTAAGGTATCGGAGAAAATGAACGTAAGTCCTACAGCTAGCATGTACAATGCTATCATGGCAGGATACTTCCGAGAGAAGAACTCTTCTGATGGATTGATGGTTTTCAAGCAAATGGAACTTGCGGGTGTAAAACCAGATTCCATAACTTTCAGCTGTCTGATCAGCAATTGTGAATGTGAGGAGGATATTATCAAGTATTATGAAGAACTGAAGAGTTCTGGAGTTCAAGTGACAAAGCAGGTTTTCATGGCGCTTATAAATGCATATGCTGCTCATGGACAATTTGAGAAGGCAAAACAGATTATATCGGGTGAAGGAATACCAGTCAAGAACTTGAATGAAATTAGAAGTGTGCTAGCCTCTGCTCTTGCTTCACATGGGCAAACGGCTGATGCCCTGAAAATTTATGATGAAATGAAACAAGCTGGATGTGATATGGAGCCCAAAGCTGTTGCTAGTCTTATTGAGCACTATCCATTCGATGGGCCGCTGAATAGAATGCTTCAGTTACTTGGTGATTTGCATCATGATCTTGATGACTGGATAAAATATTGTTTCAGAGTTATCTTGTTTTCTGTTAAACGCAACGATCTGAGTTCAACTGTTGATCTATTGCAGCAGCTGAGTTACAGATGCAGTAATGATGAAGTGACGATGGGAATGGCTTTTAATGAGATTTGTTCATTCATTTCAGAGTCTGAGCCTACATATTTAGAAACAGGCCTACAATTGCTTCAATTTATAAAGAACGATCTTGGTCTTTCTCCTCCACGAAGATGCCTTGATTTTCTCCTTGGCGCTTGTGCTAATGCCAAAGATGCAGAAAGCTCTCGCCATATCTGGAAAGAATATGAAAATGCGGGGCTCCCTTACAATACCATTAGTTACTTGAGGATGTTTCAAGCTCTTTTAGCATCTGGGGCTCTAGAATCTGCAAAAGTTTTGCGTGATAAAATTCCAAAAGATGATGCTCATGTTTGGCGGATAATCAAGGAATGTGAATTGGTTTATATTGCCTCCTCTACAGCAAAGAAGGCAAAAGAAAAAATGAAGAAAGAGATGCTGAAAAGTGAAATGAGCAGACATAAGTGA 1497 38.88 NGAENIPYLIYNYAVSIPNLAIEDTVSKFKSMHFKLDINPSSASYEKLICYCCGSLKVHMALDIANEMCDADFKLSIDVLHSILHALDEGYEFNLVHQVYSLICRHNLEPDSETFRGMISLFVKMKDFQSAYDMIKVSEKMNVSPTASMYNAIMAGYFREKNSSDGLMVFKQMELAGVKPDSITFSCLISNCECEEDIIKYYEELKSSGVQVTKQVFMALINAYAAHGQFEKAKQIISGEGIPVKNLNEIRSVLASALASHGQTADALKIYDEMKQAGCDMEPKAVASLIEHYPFDGPLNRMLQLLGDLHHDLDDWIKYCFRVILFSVKRNDLSSTVDLLQQLSYRCSNDEVTMGMAFNEICSFISESEPTYLETGLQLLQFIKNDLGLSPPRRCLDFLLGACANAKDAESSRHIWKEYENAGLPYNTISYLRMFQALLASGALESAKVLRDKIPKDDAHVWRIIKECELVYIASSTAKKAKEKMKKEMLKSEMSRHK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24664808 24679612 + CcPI632755_05g016870.1 Cco05g1687 179315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1687 498 Pfam PPR repeat family 145 192 IPR002885 -
Cco05g1687 498 Gene3D Tetratricopeptide repeat domain 142 326 IPR011990 GO:0005515(InterPro)
Cco05g1687 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Cco05g1687 498 PANTHER OS02G0132600 PROTEIN 2 478 - -
Cco05g1687 498 Gene3D Tetratricopeptide repeat domain 9 141 IPR011990 GO:0005515(InterPro)
Cco05g1687 498 Gene3D Tetratricopeptide repeat domain 327 498 IPR011990 GO:0005515(InterPro)
Cco05g1687 498 Pfam PPR repeat 217 236 IPR002885 -
Cco05g1687 498 Pfam PPR repeat 253 279 IPR002885 -
Cco05g1687 498 NCBIfam pentatricopeptide repeat 149 182 IPR002885 -
Cco05g1687 498 NCBIfam pentatricopeptide repeat 254 279 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1687 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1687 Cco-Chr5:24664808 Cco03g0282 Cco-Chr3:3057718 5.30E-06 dispersed
Cco05g1687 Cco-Chr5:24664808 Cco05g1131 Cco-Chr5:10363639 6.30E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g434 . . . Bda09g00385 . Bpe08g01139 . . . . Cma01g01150 . . . . . Cpe02g00751 Bhi09g01943 . . . Hepe01g1308 . . . . . . . . . Cone6ag0086 . . . Lsi04g01240 . . . . . . . . . Bma07g01313 . . Cmo01g01202 . . . . Car16g00562 . . . . . . . . . Cla05g01536 Cam05g1643 Cec05g1649 Cco05g1687 Clacu05g1637 Cmu05g1532 Cre05g1642 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006190 1 2 0 1 1 1 1 1 1 1 1 1 1 0 2 2 1 1 1 1 1 5 1 2 1 1 1 2 1 1 37