Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1688 ATGATTAGAGTGGATGTTGGAGAATTTGTGATTCTTGTATTTTGGGTATTGGGTATTTTGCTTACTTTGGTTCTGGGGATGAGGAATGATGAAGCTCTGAAACAACAAGGAACCGTAGCGGGCTCTGGGCGGGCTCATGAGTTCTTATCAAGTTCCTTTCGTGCCTTTTCTAGTTATATGAAGATTGTTTCTGCTGGGGCATCCACTGTTGCACGGTCGGCTGCTTCAGTGGCATCTTCTTTGGTGGATAAGGATGATGAAGCAAATGGATTCCAGGTGAATTGGGCCGGCTTTGACAAGTTAGAGTGGGACGACAATGTCATTCGACAGGTTCTTCTGTTGGGTTTTCGTTCTGGTTTCCAGGTTTGGGATGTTGAGGAAGCAAATAATGTCCAAGACCTTGTTTCTCGGTATGATGGTTCTGTTTCATACATGCAAGTGTTACCCAGACCAATTCCGTCAATGAGATCAGGAGATAAGTTTGCAGAAAGTAGGCCATTGCTGGTGCTTTCTGCTTATGGTTCCATTGCCGCTGCTTTTAACATTCAGGATCGATTAGCCTCTTCTAGCAATGCAGCCATCCCAAAGGGCCAGGAACTAGTAGATGGGAATTTTATGCCTACATTGGTTAGGTTTTATTCCTTGAAATCTCAGACTTACATGCACGAGCTCAAATTTAGATCAGTTGTTTATTCTGTGAGATGCAGCCCCCTGGTGGTTGCCATTACTCTGGCAACTCAGATACACTGCATCAATGCTACCACTTTGGAGAAGGAACATATCATTCTTACAAATCCTGTTGTTTCTGGTCTTCCTGGATCTGGAGGAGGTATAGGTTATGGACCCCTTGCAGTGGGACCCAGATGGCTGGCTTACAGTGGAAGTCCGATCATGGTGTCAAATACAGGACGAGTTATTCCACAGCATTTAAAACCTTCTGCTAGTTTTTCTCATTCTTCCTCAAATGGAAGTTTAGTTGCTCACTATGCAAAGGAGTCAAGTAAGCAACTTGCAGCAGGCATTGTTACCCTTGGCGACAAGGGTATTAAGAAGCTATCGAGGTATTACTCCGAGCTCTTACCCGAAAGCAACACTCTTCAATCAGGTGCTCTGGGTTTGAAGGGGATTGGAACTCTTAATGGCCATGCTGCAGATGCAGATAGTGTTGGAATGGTTATTGTGAAAGACATTGTCAGCAAGGTGGTCATCACCCAGTTTAAGGCACATAAGAGCCCAATTTCTGCTTTATGCTTTGATCCAAGTGGCATCATCTTGGTGACTGCTTCTGTTCAGGGCCATAGCATAAATGTTTTCAAAATTATGCCAAGTTCCAGTTTGAATTCATCTGTATCTAGTACTGCTGCATCTTATAGCCATTTGTACAGACTCCAAAGAGGCTTCACTAATGCAGTCATACAAGACATCAGTTTCAGCTACGATAGCAACTGGATCATGATTAGTTCCTCTAGAGGGACAAGCCATCTCTTTGCTATAAACCCTGCTGGGGGACAGGTGAATTTCCCATCTGCTGACATCAGTTCTATTACTAGAAATGGTGGGCCGGTGGTTCCTGTGAGACAAACTGTTCGACGAGTTGATTCTGGTTCGCACATGCCTAGTAAACAGAACCAATGTGCTACTGGTAGTCCACTTACACTTTCTGCTGTTACTAGAATACATCATGGAAGTAATGGCTGGCGAGGCACTGTCAGTAGTGCTGCAGCTGCTGCAACCGGTAGAATGGGTTTTGTTTCGGGAGCTATTGCTTCAGCTTTCCACGAGTGTAAGGGAAATGCTGTGCATGTGGACAATGGGTCTTCTTCTGAGGTTAGGTACCACATATTAGTTTTTTCTCCATCTGGCAGTATGATACAGTATGCATTGCGAGTGGGTTTAGATTCAACCATAGTTTTGCCGAGATCTAGCACAGCTCTTGAATTCATCCCCGAGTTGGATGCAAGACTAGTAGTTGAAGCTATCCAAAAATGGAATATATCTCAGAAACAAAACCGTAGGGCTCAAGATAATAGCATTGATATATATGGTGACAATGGAGGTTTCGAATGCAACAAAAATTATTGTGAAAAAATGAATGGGAAACCTGTTCTTCTTGAAGCTAGTGGCAATGTCTTGAAGGCAAAGACTTGCAGGGAGGAACAATACCATCTGTATATTTCAGAAGCGGAACTGCAGATGCATGCTGCTCGTACTCCGTTGTGGACAAAATCTGAGATATATTTTCAAGTGATGGCAAGAGATGGAGTCAAAGTTGATGAAATTGATAATCCTGGAGAACTTGAAATTGAAGGGATCCCCACTCGTACAATCGAAGCTAGGTCAAAAGACCTAGTTCCAGTTTTTGACTATCTTCAGTCATCCAAAATTTCGCAGCCAAGGTATTTAAATAGCAACAGTGACCAGCTGTTGCCGCACCAGAAATCTGGCCAATTTGAAAATGGAAGGCAATTGTGGAGGAGCGATGCAAGTCCCCACGACTCTGTTGTCGGCAACGGACCTGAAGTAACTGGTAGGCATGGTTACAAGATGGCGACAGAAACCAAGGGCATTGTAAATGAGTATGAATGCCCAAGGTCACAGACCCAGCTCAGTAATGTAAATAATTGTACAGAGAGCATAAGCATGGAGTCTCAACCCAAATCTGTAAATAATCATCATAAAAGTGGCATCAGGGTGGAGAATCATTTTGAAGACCTAGGTGATGAATTTGAGTAG 2733 43.58 MIRVDVGEFVILVFWVLGILLTLVLGMRNDEALKQQGTVAGSGRAHEFLSSSFRAFSSYMKIVSAGASTVARSAASVASSLVDKDDEANGFQVNWAGFDKLEWDDNVIRQVLLLGFRSGFQVWDVEEANNVQDLVSRYDGSVSYMQVLPRPIPSMRSGDKFAESRPLLVLSAYGSIAAAFNIQDRLASSSNAAIPKGQELVDGNFMPTLVRFYSLKSQTYMHELKFRSVVYSVRCSPLVVAITLATQIHCINATTLEKEHIILTNPVVSGLPGSGGGIGYGPLAVGPRWLAYSGSPIMVSNTGRVIPQHLKPSASFSHSSSNGSLVAHYAKESSKQLAAGIVTLGDKGIKKLSRYYSELLPESNTLQSGALGLKGIGTLNGHAADADSVGMVIVKDIVSKVVITQFKAHKSPISALCFDPSGIILVTASVQGHSINVFKIMPSSSLNSSVSSTAASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPAGGQVNFPSADISSITRNGGPVVPVRQTVRRVDSGSHMPSKQNQCATGSPLTLSAVTRIHHGSNGWRGTVSSAAAAATGRMGFVSGAIASAFHECKGNAVHVDNGSSSEVRYHILVFSPSGSMIQYALRVGLDSTIVLPRSSTALEFIPELDARLVVEAIQKWNISQKQNRRAQDNSIDIYGDNGGFECNKNYCEKMNGKPVLLEASGNVLKAKTCREEQYHLYISEAELQMHAARTPLWTKSEIYFQVMARDGVKVDEIDNPGELEIEGIPTRTIEARSKDLVPVFDYLQSSKISQPRYLNSNSDQLLPHQKSGQFENGRQLWRSDASPHDSVVGNGPEVTGRHGYKMATETKGIVNEYECPRSQTQLSNVNNCTESISMESQPKSVNNHHKSGIRVENHFEDLGDEFE 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24698670 24702816 + CcPI632755_05g016880.1 Cco05g1688 179316

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1688 910 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 41 875 IPR045142 GO:0005737(PANTHER)|GO:0006914(InterPro)|GO:0042594(PANTHER)
Cco05g1688 910 SMART WD40_4 399 439 IPR001680 GO:0005515(InterPro)
Cco05g1688 910 SMART WD40_4 456 497 IPR001680 GO:0005515(InterPro)
Cco05g1688 910 Pfam BCAS3, WD40 repeat 209 505 IPR048382 -
Cco05g1688 910 SUPERFAMILY WD40 repeat-like 111 499 IPR036322 GO:0005515(InterPro)
Cco05g1688 910 MobiDBLite consensus disorder prediction 882 910 - -
Cco05g1688 910 Gene3D - 361 550 IPR015943 GO:0005515(InterPro)
Cco05g1688 910 Pfam BCAS3 microtubule associated cell migration factor, C-terminal 648 788 IPR022175 -
Cco05g1688 910 MobiDBLite consensus disorder prediction 826 845 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1688 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1688 Cco-Chr5:24698670 Cco09g0635 Cco-Chr9:5629280 1.00E-95 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g429 . . Bda07g00339 Bda09g00383 . Bpe08g01141 . . . . Cma01g01151 . . . Sed07g2655 . Cpe02g00750 Bhi09g01945 Tan01g4507 Cmetu04g3052 . Hepe01g1310 Mch11g1153 . . . . . . . . . . . . Lsi04g01243 . Chy04g01014 . . . . . . . Bma07g01315 Bma14g00356 . Cmo01g01204 Cmo09g00922 . . . . . . . . . . . . . Cla05g01538 Cam05g1645 Cec05g1651 Cco05g1688 Clacu05g1639 Cmu05g1534 Cre05g1644 . . . Cme04g00804
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39