Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1689 | ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTAGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAATGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCGCCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTGAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCATGTACTCCGGCCACCCGTCGCATAA | 708 | 49.29 | MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCNASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 24706954 | 24709269 | - | CcPI632755_05g016890.1 | Cco05g1689 | 179317 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1689 | 235 | PANTHER | BHLH TRANSCRIPTION FACTOR | 8 | 235 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Cco05g1689 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 127 | IPR011598 | GO:0046983(InterPro) | |
Cco05g1689 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 75 | 146 | IPR036638 | GO:0046983(InterPro) | |
Cco05g1689 | 235 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 179 | - | - | |
Cco05g1689 | 235 | CDD | bHLH_AtILR3_like | 80 | 155 | - | - | |
Cco05g1689 | 235 | CDD | bZIP | 141 | 173 | - | - | |
Cco05g1689 | 235 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
Cco05g1689 | 235 | Gene3D | - | 65 | 124 | IPR036638 | GO:0046983(InterPro) | |
Cco05g1689 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
Cco05g1689 | 235 | Coils | Coil | 123 | 178 | - | - | |
Cco05g1689 | 235 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1798 | Cco-Chr4:32875983 | Cco05g1689 | Cco-Chr5:24706954 | 1.10E-09 | dispersed | |
Cco05g1689 | Cco-Chr5:24706954 | Cco10g0542 | Cco-Chr10:6492922 | 2.70E-77 | dispersed | |
Cco05g0504 | Cco-Chr5:4055064 | Cco05g1689 | Cco-Chr5:24706954 | 2.60E-29 | transposed | |
Cco02g0899 | Cco-Chr2:10824027 | Cco05g1689 | Cco-Chr5:24706954 | 5.00E-55 | wgd | |
Cco03g0510 | Cco-Chr3:5255238 | Cco05g1689 | Cco-Chr5:24706954 | 6.10E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59316 | PF00010 | HLH | 9.90E-10 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1689 | - | - | - | 0.0 |