Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1689 ATGGTATCCCCCGAAAATCCCAATTGGTTGTTTGATTATGGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTCCCGGTCACGAGTTCAAGCTTCTCCTGGGCTATTCAGCCCTTTAACGGCATCCATGATACCGGTGTGGAAATTGAGGGATCATTGGCAGATCTAGATGACCGTCTAGAATCTGGCTCAAAAAAGAGGGTCAGATCTGATTCATGTAATGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTCTGGAACTGGGCTCCATTTTGGATCCTGGAAGACCGCCCAAAACTGACAAGGCTGCAATTTTAGTTGACGCGGTTCGAATGGTGAATCAGTTGCGTAGCGAAACCCAGAAACTAAAGGAATCAAATTCAAGTCTCCAGGAGAAGATTAAAGAGTTGAAGGCCGAGAAGAACGAGCTTCGTGACGAGAAGCAGAGGCTCAAGGCAGATAAGGAGAGGCTAGAGCAGCAAGTGAAGTCCATGCCTGCTCAACAACCGGGCTTCTTACCTCCACCAATCCCCACATTTGCTGCTCAGGGTCAAGCTCCTGGCAATAAGTTAGTTCCTTTCATTGGTTACCACCCGAGTGTTGCCATGTGGCAGTTCATGCCACCTGCTGCGGTGGACACGTCACAGGACCATGTACTCCGGCCACCCGTCGCATAA 708 49.29 MVSPENPNWLFDYGLIDDIPVPDANFPVTSSSFSWAIQPFNGIHDTGVEIEGSLADLDDRLESGSKKRVRSDSCNASSSKACREKLRRDRLNDKFLELGSILDPGRPPKTDKAAILVDAVRMVNQLRSETQKLKESNSSLQEKIKELKAEKNELRDEKQRLKADKERLEQQVKSMPAQQPGFLPPPIPTFAAQGQAPGNKLVPFIGYHPSVAMWQFMPPAAVDTSQDHVLRPPVA 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24706954 24709269 - CcPI632755_05g016890.1 Cco05g1689 179317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1689 235 PANTHER BHLH TRANSCRIPTION FACTOR 8 235 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cco05g1689 235 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
Cco05g1689 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983(InterPro)
Cco05g1689 235 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
Cco05g1689 235 CDD bHLH_AtILR3_like 80 155 - -
Cco05g1689 235 CDD bZIP 141 173 - -
Cco05g1689 235 FunFam Transcription factor bHLH34 66 124 - -
Cco05g1689 235 Gene3D - 65 124 IPR036638 GO:0046983(InterPro)
Cco05g1689 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
Cco05g1689 235 Coils Coil 123 178 - -
Cco05g1689 235 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1798 Cco-Chr4:32875983 Cco05g1689 Cco-Chr5:24706954 1.10E-09 dispersed
Cco05g1689 Cco-Chr5:24706954 Cco10g0542 Cco-Chr10:6492922 2.70E-77 dispersed
Cco05g0504 Cco-Chr5:4055064 Cco05g1689 Cco-Chr5:24706954 2.60E-29 transposed
Cco02g0899 Cco-Chr2:10824027 Cco05g1689 Cco-Chr5:24706954 5.00E-55 wgd
Cco03g0510 Cco-Chr3:5255238 Cco05g1689 Cco-Chr5:24706954 6.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59316 PF00010 HLH 9.90E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1689 - - - 0.0