Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1694 ATGGTTGGAACGCCAACTAATGGAAGGGCTCGCTTGTCCTTCTCGTTGGTTAATGGTGGACAGGAACTTTGTCTTACAAGTACTCCCACCAGCATTGCAGGCTCCGATTGCGGTGGCATTGAGTTCACTAAAGAAGATGTTGAAGCTTTGTTGAATGAGAAGCTTAAAAGGAAGGACAGGTTTAATCTAAAGGAAAAATGTGATAACATGGTGGAATACATTAAAAAGCTTAAACTCTGCATCAAATGGTTCCAAGAGCTTGAATATAGCTACTTATTAGAGCAGAAGAAGTTACAAGATGAGTTGGAATCTTCTGAGATCAAGTGCAGTGAAATGGAAATGATAGTGAAGAAGAAAGAGGAAGAATTGAATTCTATCATTGCGGAACTCAGAAAGAACAATGCTTTTTTGCAAGAGAAATTCACAAAAGAAGAATCAGATAAGTTGGCTGCAGTAGAATCTCTCACCAAGGAGAAAGAGGCTAGGTTGATTATGGAGAGGTCACAGGCTTCAATCTCTGAGGAGCTTACAAGGGCTCAACGTGAGCTCTCGAGTGCAAATCAAAAGATATCGTCTCTTAATGAGATGTACAAGCGGTTACAGGATTACATTACTAGTTTACAGCAATATAATGGCAAGCTTCATACAGAGCTTTCGACTGCTGAGGATGACCTTAAACGCGTAGAGAAAGAAAAAGCTGCTGTGGTGGAGGACCTCAGTATGATCAAGGGTGAACTTGCTCTGTCTAAAGCATCTCAAGATGAGGCAGTAAAGCAGAAGGATGCTATGGTGAACGAAGTTACGTGTTTAAGAAGAGAAATACAACAGGTTAGAGATGATCGAGATCGCCAACTATCTCTGGTTCAGACTTTGTCAGATGAAGTAGAGAAGTGCAGAGAGTCTGCAGGAAAGTACTGTGAGGAGCTGGATGAAATGAAGGCAAAAGCAAATGAATTAGAGGCAACATGTTCTTCACAAAGTACTGAGCTAAGGGCATTGCAAAATCATCTAGCTGCTGCAGAAAACAAGCTGCAGGTCTCTGATCTAACTGCAATGGAGACAATGCATGAATTCGAAGATCAAAAGAGACTTGTACTCGAGTTACAACAGCGACTTGCAGATGCAGAAAATAAGCTTATGGAAGGAGAGAAGCTTCGGAAAAAATTGCACAATACTATCTTGGAATTAAAAGGAAACATTCGTGTATTTTGTCGAGTGCGACCTCTGTTACCTGATGAACGTTCTAGTCCCGAAGGCAATTTTATCTCCTATCCGTCATCAGTGGAATCTCTTGGACGAGGAATTGATCTGGTGCAAAATGGTCAAAGACATTCTTTCACATATGACAAGGTTTTTGCACCAGAAGCGACACAGAAAGACATCTTCGTAGAAATTTCCCAGCTCGTACAAAGTGCCCTTGATGGTTATAAGGTTTGCATATTTGCCTACGGTCAAACTGGTTCGGGAAAAACCTATACAATGATGGGTCGACCAGGGCTCCTTGAAGAGAAGGGACTGATACCTCGATCGTTGGAACAAATATTTCAAACTAGGCAATCTCTTCAACCTCAGGGTTGGAAATATGAAATGCAGGTATCGATGTTGGAAATATACAATGAAACAATCCGTGATTTACTATCAACAAATCGATCAACTCCAGATGTGCTTCGAGCAGAAAATGGTTCTCCTATAAAACCTTACTCAATCAAACACGATGCAAGTGGAAATACTCAAGTTTCTGATCTTACAGTCGTGGATGTTCGTAGTGCCAGGGAGGTCTCATTTCTATTAGAGCAAGCTTCTCGTAGCAGATCCGTTGGCAAAACTCAAATGAACGAGCAATCATCAAGAAGTCATTTTGTGTTCACCCTCAAAATATCCGGTATCAACGAGAGTACTGATCAACAAGTACAAGGGATTTTGAATTTAATTGATCTTGCTGGGAGTGAGCGTCTTTCCAAAAGCGGGTCGACAGGAGATCGACTGAAAGAAACCCAAGCCATAAATAGAAGTTTATCATCTTTAAGTGATGTTATATTTGCTTTGGCAAAGAAGGAAGAGCATGTTCCATTTAGAAACTCCAAGCTTACCTATCTTCTTCAGCCATGTCTCGGTGGAGATTCAAAGACGTTGATGTTTGTAAATATCTCTCCCGATTCCTCCTCGGCCAGTGAATCACTCTGCTCGCTTCGCTTTGCTGCCCGGGTTAATGCTTGTGAGATCGGTACTCCTCGGCGTCTAACCAATACACGACCTTAA 2259 41.61 MVGTPTNGRARLSFSLVNGGQELCLTSTPTSIAGSDCGGIEFTKEDVEALLNEKLKRKDRFNLKEKCDNMVEYIKKLKLCIKWFQELEYSYLLEQKKLQDELESSEIKCSEMEMIVKKKEEELNSIIAELRKNNAFLQEKFTKEESDKLAAVESLTKEKEARLIMERSQASISEELTRAQRELSSANQKISSLNEMYKRLQDYITSLQQYNGKLHTELSTAEDDLKRVEKEKAAVVEDLSMIKGELALSKASQDEAVKQKDAMVNEVTCLRREIQQVRDDRDRQLSLVQTLSDEVEKCRESAGKYCEELDEMKAKANELEATCSSQSTELRALQNHLAAAENKLQVSDLTAMETMHEFEDQKRLVLELQQRLADAENKLMEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDERSSPEGNFISYPSSVESLGRGIDLVQNGQRHSFTYDKVFAPEATQKDIFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGLLEEKGLIPRSLEQIFQTRQSLQPQGWKYEMQVSMLEIYNETIRDLLSTNRSTPDVLRAENGSPIKPYSIKHDASGNTQVSDLTVVDVRSAREVSFLLEQASRSRSVGKTQMNEQSSRSHFVFTLKISGINESTDQQVQGILNLIDLAGSERLSKSGSTGDRLKETQAINRSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDSSSASESLCSLRFAARVNACEIGTPRRLTNTRP 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24751536 24755531 - CcPI632755_05g016940.1 Cco05g1694 179322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1694 752 Coils Coil 169 203 - -
Cco05g1694 752 Coils Coil 358 392 - -
Cco05g1694 752 Coils Coil 102 147 - -
Cco05g1694 752 Coils Coil 302 350 - -
Cco05g1694 752 ProSiteProfiles Kinesin motor domain profile. 399 739 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 FunFam Kinesin-like protein 345 741 - -
Cco05g1694 752 Pfam Kinesin motor domain 405 738 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 Gene3D Kinesin motor domain 345 741 IPR036961 -
Cco05g1694 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 737 IPR027417 -
Cco05g1694 752 CDD KISc_C_terminal 397 741 - -
Cco05g1694 752 Coils Coil 260 280 - -
Cco05g1694 752 PANTHER KINESIN-LIKE PROTEIN KLP-3 270 746 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cco05g1694 752 PRINTS Kinesin heavy chain signature 609 626 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 PRINTS Kinesin heavy chain signature 689 710 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 PRINTS Kinesin heavy chain signature 640 658 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 SMART kinesin_4 397 747 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco05g1694 752 Coils Coil 211 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1694 K27887 - - csv:101215636 1397.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1694 Cco-Chr5:24751536 Cco09g2358 Cco-Chr9:37730606 6.40E-72 dispersed
Cco02g1702 Cco-Chr2:29766209 Cco05g1694 Cco-Chr5:24751536 2.80E-78 transposed
Cco03g1694 Cco-Chr3:31661240 Cco05g1694 Cco-Chr5:24751536 1.00E-62 transposed
Cco03g1819 Cco-Chr3:32834802 Cco05g1694 Cco-Chr5:24751536 3.00E-70 transposed
Cco04g0550 Cco-Chr4:17778087 Cco05g1694 Cco-Chr5:24751536 5.00E-65 transposed
Cco07g1137 Cco-Chr7:25075881 Cco05g1694 Cco-Chr5:24751536 4.60E-82 transposed
Cco10g0005 Cco-Chr10:123326 Cco05g1694 Cco-Chr5:24751536 3.80E-69 transposed
Cco10g1099 Cco-Chr10:23273712 Cco05g1694 Cco-Chr5:24751536 1.80E-75 transposed
Cco10g1647 Cco-Chr10:29889856 Cco05g1694 Cco-Chr5:24751536 5.30E-67 transposed
Cco03g0512 Cco-Chr3:5263456 Cco05g1694 Cco-Chr5:24751536 1.50E-233 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006975 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34