Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1695 ATGAATCGAACTTCTAACCTTGAGCTTTTGTCCAACAACGAAATTCCGCCTCCTTTCCAACGCGTTTGGTCAAATGTTTGTAACGTCGCCCAATTCTTCGACCTTCTTTTGGTGGATCTGGTCAGAATCGGAGACCCATTGGAGGCCTTTCCACTCCGCTTACTTTTGATTTTCTGTCAAAAATGGGATTGCATTATGCGATTCTGTTTCTTTCAAGGGTTTTCTTCTTGCCCTTTTCCCCAATTCTTTCTCGGATTTTGTTTTGATCATTGGGATTCGTCATCTTCCAGCTATGTTTTGCGATTTTTATCACAAATTCTTCTTGGGTTTGCTCAGGGATTTTTGTTTACTTGTTGTCTTTTGACGTTCTGGGATTTCGAGGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGCAGATGGCACTGACCTATGCTTTGAAGAAAGACCTGGAAGCAAAAATGGAATTAATTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTAGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTTCTAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATCGCTGTTGTTGTAACAGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAGAGTGGTTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCTTCGCCCAAATATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAGTCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGTCTCTGATGGTGCACGTACTTCAATGCAGGGACCTCCGTCTTTTGGAGCTACTGGAATTCCGAATAATTCATCTTTTGGATCAACAAATATGGCTGGCAGTACTAAGGGTTTGGTGCCACCTCCTCCAGGAGCAGTACCAGTCACCCCAGAAATCATACCTCCTTTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCTCCATCCAACATGGCTAGTCCTCCTCCTCCTCCTCCTCCACCACCTCCTGCTGCAGCAGCAGCAGCACCACCACCACCACCACCAAGACCTCCTGGAAATTCATGTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTGCACCAGGCAAAGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGCGTCAGGTGATGATGATATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACAGCAGTACATTCAGATCATTGATTCAAAGAAAGCACAAAATCTTTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGGACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTCGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTAAAGACGGGCAATCGGATGAACGATGGGACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAGACTACGCTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGTTCGGAATGCCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGGATCTGCTGGATGGATCTCCTAACGACCCCGAGGAGCATTACCGTACCTTGGGTCTTCAGGTTGTCTCGGGGCTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATTGATGCAGATGCGTTGACTGGAACTGTTTCCAAACTTGGCCATGCACTGTTAAAGACAAGAGACTTTCTGAACAAAGACATGCAGGGTTTAGGTGAAGAGAGCCCATTTCATGATGCACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTACGGTTGTTTGTAATCGTACGAGATTTCTTGATAATGATAGATAAGACGTGCCGAGAAATAAAGGATGCACAGAAAAAGCAAGCGAAGGGACACAGAAAGGCAGCGTCGTCTTCTGATATCCATCACCCCCTTTCGTCGTCTTCTGATATCAATCACCCCCCTTTGTTGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACCGATACCAGTCATCCCCCTTCTTCATCTACCAATACCAATCACCCCCCATCGTCGTCTACCGATACCAATCACCCCCCTTCGTTGTCTACTAATATCAATCACTCCCCTTCAACTACAGCTTCTGATCTACGACACCCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTATTGATCGTCGGATGGGCAACTCAAGTTCAGACGATGATGATGAAAGTCCGTAG 3282 45.22 MNRTSNLELLSNNEIPPPFQRVWSNVCNVAQFFDLLLVDLVRIGDPLEAFPLRLLLIFCQKWDCIMRFCFFQGFSSCPFPQFFLGFCFDHWDSSSSSYVLRFLSQILLGFAQGFLFTCCLLTFWDFEATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAADGTDLCFEERPGSKNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSSKEVPAPAPESSADEKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKFMSQSSSLSHHQRAPSLDGSLHIVSDGARTSMQGPPSFGATGIPNNSSFGSTNMAGSTKGLVPPPPGAVPVTPEIIPPLKPPPGRAVPLPPERPSSFKPPSNMASPPPPPPPPPPAAAAAAPPPPPPRPPGNSCRPPGPPPPPPPAPGKAGPRPPPPPKSGIAPPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAQQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAVRNATGSQSFSSTSSKDLLDGSPNDPEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFLNKDMQGLGEESPFHDALKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKDAQKKQAKGHRKAASSSDIHHPLSSSSDINHPPLLSTDTNHPPSSSTDTSHPPSSSTNTNHPPSSSTDTNHPPSLSTNINHSPSTTASDLRHPPSPDLNQLIFPAIIDRRMGNSSSDDDDESP 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24880812 24887698 + CcPI632755_05g016950.1 Cco05g1695 179323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1695 1093 MobiDBLite consensus disorder prediction 973 1093 - -
Cco05g1695 1093 SMART it6_source 556 976 IPR015425 -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 392 423 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 392 561 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 988 1063 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 817 833 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 817 838 - -
Cco05g1695 1093 Pfam Formin Homology 2 Domain 562 961 IPR015425 -
Cco05g1695 1093 ProSiteProfiles Formin homology-2 (FH2) domain profile. 556 988 IPR015425 -
Cco05g1695 1093 Gene3D Formin, FH2 domain 561 991 IPR042201 -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 265 297 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 428 549 - -
Cco05g1695 1093 SUPERFAMILY Formin homology 2 domain (FH2 domain) 627 983 - -
Cco05g1695 1093 PANTHER FORMIN-RELATED 267 1089 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1695 Cco-Chr5:24880812 Cco11g0111 Cco-Chr11:1182128 2.20E-97 dispersed
Cco03g1771 Cco-Chr3:32389381 Cco05g1695 Cco-Chr5:24880812 8.70E-100 transposed
Cco05g2759 Cco-Chr5:35433806 Cco05g1695 Cco-Chr5:24880812 1.50E-82 transposed
Cco07g0242 Cco-Chr7:2495221 Cco05g1695 Cco-Chr5:24880812 2.70E-100 transposed
Cco08g1035 Cco-Chr8:22168224 Cco05g1695 Cco-Chr5:24880812 3.30E-70 transposed
Cco02g0897 Cco-Chr2:10793166 Cco05g1695 Cco-Chr5:24880812 6.80E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1695 K28090 - csv:101213072 917.146