Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1695 ATGAATCGAACTTCTAACCTTGAGCTTTTGTCCAACAACGAAATTCCGCCTCCTTTCCAACGCGTTTGGTCAAATGTTTGTAACGTCGCCCAATTCTTCGACCTTCTTTTGGTGGATCTGGTCAGAATCGGAGACCCATTGGAGGCCTTTCCACTCCGCTTACTTTTGATTTTCTGTCAAAAATGGGATTGCATTATGCGATTCTGTTTCTTTCAAGGGTTTTCTTCTTGCCCTTTTCCCCAATTCTTTCTCGGATTTTGTTTTGATCATTGGGATTCGTCATCTTCCAGCTATGTTTTGCGATTTTTATCACAAATTCTTCTTGGGTTTGCTCAGGGATTTTTGTTTACTTGTTGTCTTTTGACGTTCTGGGATTTCGAGGCAACTTGCTTGAAGGACCACGAGGAAGAGGAACTGATTCTGAGTCAACTAGCTGACCCAATTACTGGGGATGTCAACACAGAGATGGCTGAGCTGTTACTTGTTAAGTGCAACTTGGATTTGTTTCAGTTAAAGGAAGCTGCAGATGGCACTGACCTATGCTTTGAAGAAAGACCTGGAAGCAAAAATGGAATTAATTTTGAATGTCGGATGCTGACAAAAGAGAAAACAAACAGAATGCTAAGGGCCATGCATCCCCAGATGAAGCAGACTCTTTTAGATTGTTTAAGAAAGAATTTTCATGTCTCTGGGAAAGACTACAACTCTGAAGCTTGGTACACCAGGTATCTAGAGTCATTGTTTTTAATGCCTGGTAGTCTTAGAAGGAAGTTAAGTTCTAGATGGCTTCGAAGTTCTAAAGAAGTGCCTGCTCCGGCACCTGAATCTTCAGCAGATGAAAAACCTTCAAGAAAAGCTTCTAGCACAAGTGGTCAAAAAGAAAAGAAATCTAATAATCAACAAACAGTCATCATCGCTGTTGTTGTAACAGCAACAGTGACTTTTATTATTGTAGCTCTGCTATTTTTATGCTATAATAAGAGTGGTTCCAGAGTGAAGCAAAATGATGAAAATCATGAAAGGCCTCTCCTAAGCTTGAGTTTAAGTTCTTCGCCCAAATATTCTGCCTTTGGGAATTCTCTTAAGGATGACAAGTTCATGAGTCAATCATCTAGCTTGAGTCACCACCAGAGAGCTCCATCTTTGGATGGTAGCCTGCACATTGTCTCTGATGGTGCACGTACTTCAATGCAGGGACCTCCGTCTTTTGGAGCTACTGGAATTCCGAATAATTCATCTTTTGGATCAACAAATATGGCTGGCAGTACTAAGGGTTTGGTGCCACCTCCTCCAGGAGCAGTACCAGTCACCCCAGAAATCATACCTCCTTTGAAGCCTCCTCCTGGCAGGGCTGTTCCCCTGCCTCCTGAACGCCCTTCGTCTTTTAAGCCTCCATCCAACATGGCTAGTCCTCCTCCTCCTCCTCCTCCACCACCTCCTGCTGCAGCAGCAGCAGCACCACCACCACCACCACCAAGACCTCCTGGAAATTCATGTCGCCCTCCAGGACCTCCTCCACCTCCACCACCTGCACCAGGCAAAGCAGGCCCTCGCCCACCACCACCTCCCAAAAGTGGTATTGCTCCTCCTCGGCCACCTCCATTAGCACCCAAAGGTGCAAATCCACCTCGACCTCCAAAGCCTTTTGCGTCAGGTGATGATGATATGGACGAATCAGGTGTTCCCAAAGCCAAATTGAAACCATTTTTCTGGGACAAAGTTCTTGCAAACCCCGACCATTCCATGGTCTGGCATCAGATAAAAGCAGGGTCTTTCCAATTCAACGAGGAGATGATAGAAACTCTTTTTGGATATACGCCTGTAGATAAAACCAAAACTGAGGGCAAGAAGGAGTCATCATCACAAGATCCTGCACAGCAGTACATTCAGATCATTGATTCAAAGAAAGCACAAAATCTTTCCATTCTTTTGCGAGCACTAAATGTGACAAAAGAAGAAGTCTGTGATGCGCTTCATGAAGGGACTGAACTTCCTTCTGAACTTCTTGAGAACTTACTGAGGATGGCACCAACTCCAGAAGAAGAACTCAAGCTTAGACTGTTTAGTGGGGAACTTTCTCAACTTGGAAATGCTGAGCGGTTCCTTAAATCTTTGGTCGATATCCCATTTGCTTTCAAAAGGTTGGAATCGCTGCTTTTCATGGGCACTCTTCAGGAGGACATCACCATCACTAAAGAGTCCTTTGCTAATTTGGAGGTTGCTTGCAAGGAACTTCGGAGCAGCAGGTTGTTCCTCAAACTTCTAGAAGCTGTTCTAAAGACGGGCAATCGGATGAACGATGGGACTTTTCGAGGTGGTGCACAAGCATTCAAATTGGACACTCTTTTAAAATTGTCGGATGTGAAAGGAAAAGATGGCAAGACTACGCTATTGCACTTTGTAGTTCAGGAGATAATTCGCACAGAAGGGATAAGAGCTGTTCGGAATGCCACAGGAAGCCAGAGCTTCTCAAGCACCTCATCAAAGGATCTGCTGGATGGATCTCCTAACGACCCCGAGGAGCATTACCGTACCTTGGGTCTTCAGGTTGTCTCGGGGCTGAGTGGTGAACTTCAGAATGTGAAGAAAGCAGCAACCATTGATGCAGATGCGTTGACTGGAACTGTTTCCAAACTTGGCCATGCACTGTTAAAGACAAGAGACTTTCTGAACAAAGACATGCAGGGTTTAGGTGAAGAGAGCCCATTTCATGATGCACTGAAAGTCTTTGTGCAGAGTGCTGAGGTTGATATCATGGCCCTCCTGGAAGAAGAAAAAAGAATCATGGAGTTGGTGAAAAGCACGGGCGACTACTTCCATGGAAATGCAGGGAAGGACGAGGGCTTACGGTTGTTTGTAATCGTACGAGATTTCTTGATAATGATAGATAAGACGTGCCGAGAAATAAAGGATGCACAGAAAAAGCAAGCGAAGGGACACAGAAAGGCAGCGTCGTCTTCTGATATCCATCACCCCCTTTCGTCGTCTTCTGATATCAATCACCCCCCTTTGTTGTCTACTGATACCAATCACCCCCCTTCGTCGTCTACCGATACCAGTCATCCCCCTTCTTCATCTACCAATACCAATCACCCCCCATCGTCGTCTACCGATACCAATCACCCCCCTTCGTTGTCTACTAATATCAATCACTCCCCTTCAACTACAGCTTCTGATCTACGACACCCCCCTTCTCCTGATTTGAATCAGCTGATTTTCCCAGCAATTATTGATCGTCGGATGGGCAACTCAAGTTCAGACGATGATGATGAAAGTCCGTAG 3282 45.22 MNRTSNLELLSNNEIPPPFQRVWSNVCNVAQFFDLLLVDLVRIGDPLEAFPLRLLLIFCQKWDCIMRFCFFQGFSSCPFPQFFLGFCFDHWDSSSSSYVLRFLSQILLGFAQGFLFTCCLLTFWDFEATCLKDHEEEELILSQLADPITGDVNTEMAELLLVKCNLDLFQLKEAADGTDLCFEERPGSKNGINFECRMLTKEKTNRMLRAMHPQMKQTLLDCLRKNFHVSGKDYNSEAWYTRYLESLFLMPGSLRRKLSSRWLRSSKEVPAPAPESSADEKPSRKASSTSGQKEKKSNNQQTVIIAVVVTATVTFIIVALLFLCYNKSGSRVKQNDENHERPLLSLSLSSSPKYSAFGNSLKDDKFMSQSSSLSHHQRAPSLDGSLHIVSDGARTSMQGPPSFGATGIPNNSSFGSTNMAGSTKGLVPPPPGAVPVTPEIIPPLKPPPGRAVPLPPERPSSFKPPSNMASPPPPPPPPPPAAAAAAPPPPPPRPPGNSCRPPGPPPPPPPAPGKAGPRPPPPPKSGIAPPRPPPLAPKGANPPRPPKPFASGDDDMDESGVPKAKLKPFFWDKVLANPDHSMVWHQIKAGSFQFNEEMIETLFGYTPVDKTKTEGKKESSSQDPAQQYIQIIDSKKAQNLSILLRALNVTKEEVCDALHEGTELPSELLENLLRMAPTPEEELKLRLFSGELSQLGNAERFLKSLVDIPFAFKRLESLLFMGTLQEDITITKESFANLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGKDGKTTLLHFVVQEIIRTEGIRAVRNATGSQSFSSTSSKDLLDGSPNDPEEHYRTLGLQVVSGLSGELQNVKKAATIDADALTGTVSKLGHALLKTRDFLNKDMQGLGEESPFHDALKVFVQSAEVDIMALLEEEKRIMELVKSTGDYFHGNAGKDEGLRLFVIVRDFLIMIDKTCREIKDAQKKQAKGHRKAASSSDIHHPLSSSSDINHPPLLSTDTNHPPSSSTDTSHPPSSSTNTNHPPSSSTDTNHPPSLSTNINHSPSTTASDLRHPPSPDLNQLIFPAIIDRRMGNSSSDDDDESP 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24880812 24887698 + CcPI632755_05g016950.1 Cco05g1695 179323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1695 1093 MobiDBLite consensus disorder prediction 973 1093 - -
Cco05g1695 1093 SMART it6_source 556 976 IPR015425 -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 392 423 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 392 561 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 988 1063 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 817 833 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 817 838 - -
Cco05g1695 1093 Pfam Formin Homology 2 Domain 562 961 IPR015425 -
Cco05g1695 1093 ProSiteProfiles Formin homology-2 (FH2) domain profile. 556 988 IPR015425 -
Cco05g1695 1093 Gene3D Formin, FH2 domain 561 991 IPR042201 -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 265 297 - -
Cco05g1695 1093 MobiDBLite consensus disorder prediction 428 549 - -
Cco05g1695 1093 SUPERFAMILY Formin homology 2 domain (FH2 domain) 627 983 - -
Cco05g1695 1093 PANTHER FORMIN-RELATED 267 1089 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1695 K28090 - - csv:101213072 917.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1695 Cco-Chr5:24880812 Cco11g0111 Cco-Chr11:1182128 2.20E-97 dispersed
Cco03g1771 Cco-Chr3:32389381 Cco05g1695 Cco-Chr5:24880812 8.70E-100 transposed
Cco05g2759 Cco-Chr5:35433806 Cco05g1695 Cco-Chr5:24880812 1.50E-82 transposed
Cco07g0242 Cco-Chr7:2495221 Cco05g1695 Cco-Chr5:24880812 2.70E-100 transposed
Cco08g1035 Cco-Chr8:22168224 Cco05g1695 Cco-Chr5:24880812 3.30E-70 transposed
Cco02g0897 Cco-Chr2:10793166 Cco05g1695 Cco-Chr5:24880812 6.80E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g414 Blo03g00585 Blo03g01433 Bda07g00336 Bda09g00382 . Bpe08g01143 . . . . Cma01g01155 Cma09g00921 . Car09g00837 . Cpe06g00740 Cpe02g00746 Bhi09g01953 . . . Hepe01g1315 . . . . . . . . . . Cone9ag0106 . . Lsi04g01249 . Chy04g01020 . . . . . Bpe11g00522 . Bma07g01317 Bma14g00359 . Cmo01g01208 Cmo09g00918 . . . Car16g00567 . . . . . . . . . Cla05g01545 Cam05g1653 Cec05g1657 Cco05g1695 Clacu05g1644 Cmu05g1539 Cre05g1650 . . . Cme04g00799
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g0242 . 181 1052 FH2 protein (formin) Gene Family AT3G25500 52.1 6.0e-193 671.8
Cco11g0111 . 459 935 FH2 protein (formin) Gene Family AT3G25500 66.9 2.2e-166 583.6
Cco02g1315 . 438 893 FH2 protein (formin) Gene Family AT3G25500 60.5 1.7e-142 504.2
Cco03g1771 . 495 892 FH2 protein (formin) Gene Family AT3G25500 51.7 4.0e-104 376.7
Cco07g0242 . 615 1069 FH2 protein (formin) Gene Family AT2G43800 60.3 5.4e-142 502.3
Cco02g1315 . 472 909 FH2 protein (formin) Gene Family AT2G43800 55.3 1.7e-124 444.1
Cco02g0897 . 452 591 FH2 protein (formin) Gene Family AT4G15200 71.1 4.0e-48 189.5
Cco05g1695 . 550 696 FH2 protein (formin) Gene Family AT4G15200 66.7 3.4e-47 186.4
Cco05g1695 . 551 987 FH2 protein (formin) Gene Family AT5G54650 69.2 3.4e-168 589.3
Cco02g0897 . 452 908 FH2 protein (formin) Gene Family AT5G54650 63.2 5.4e-158 555.4
Cco07g0242 . 626 1027 FH2 protein (formin) Gene Family AT5G54650 50.8 2.9e-103 373.6
Cco02g1315 . 31 912 FH2 protein (formin) Gene Family AT5G67470 58.3 3.4e-237 818.5
Cco07g0242 . 607 1069 FH2 protein (formin) Gene Family AT5G67470 58.9 9.9e-136 481.5
Cco11g0111 . 472 917 FH2 protein (formin) Gene Family AT5G67470 60.9 3.3e-131 466.5
Cco03g1771 . 495 894 FH2 protein (formin) Gene Family AT5G67470 50.9 1.2e-104 378.3
Cco05g2759 . 349 832 FH2 protein (formin) Gene Family AT1G59910 52.5 2.5e-126 450.3
Cco07g0242 . 647 1028 FH2 protein (formin) Gene Family AT5G48360 52.6 4.0e-101 366.3
Cco02g1315 . 496 870 FH2 protein (formin) Gene Family AT5G48360 50.7 1.2e-89 328.2
Cco02g1315 . 476 869 FH2 protein (formin) Gene Family AT3G05470 51.6 4.7e-106 382.9
Cco05g1695 . 556 970 FH2 protein (formin) Gene Family AT3G05470 50.6 4.7e-106 382.9
Cco07g0234 . 952 1263 FH2 protein (formin) Gene Family AT1G42980 51.1 2.0e-69 259.6
Cco07g0234 . 1 1270 FH2 protein (formin) Gene Family AT1G31810 65.3 0.0e+00 1223.8
Cco06g1795 . 19 436 FH2 protein (formin) Gene Family AT1G31810 63.9 7.9e-144 508.8
Cco06g1795 . 121 442 FH2 protein (formin) Gene Family AT5G07650 74.8 1.6e-129 460.7
Cco01g1794 . 982 1292 FH2 protein (formin) Gene Family AT5G07650 70.1 1.9e-119 427.2
Cco05g1867 . 1081 1403 FH2 protein (formin) Gene Family AT5G07650 65.0 2.8e-110 396.7
Cco06g1422 . 936 1255 FH2 protein (formin) Gene Family AT5G07650 62.9 6.3e-110 395.6
Cco07g0234 . 936 1267 FH2 protein (formin) Gene Family AT5G07650 59.6 4.5e-108 389.4
Cco06g1795 . 48 435 FH2 protein (formin) Gene Family AT5G07770 69.2 1.5e-140 496.9
Cco01g1794 . 905 1292 FH2 protein (formin) Gene Family AT5G07770 63.0 4.9e-128 455.3
Cco05g1867 . 1005 1395 FH2 protein (formin) Gene Family AT5G07770 59.4 7.2e-119 424.9
Cco06g1422 . 859 1247 FH2 protein (formin) Gene Family AT5G07770 57.3 2.5e-116 416.4
Cco07g0234 . 872 1261 FH2 protein (formin) Gene Family AT5G07770 55.2 3.7e-115 412.5
Cco05g1867 . 997 1403 FH2 protein (formin) Gene Family AT3G32400 76.2 7.5e-170 594.0
Cco06g1422 . 843 1256 FH2 protein (formin) Gene Family AT3G32400 66.6 4.3e-149 525.0
Cco06g1795 . 48 442 FH2 protein (formin) Gene Family AT3G32400 65.2 8.7e-142 500.7
Cco07g0234 . 872 1266 FH2 protein (formin) Gene Family AT3G32400 65.5 1.2e-140 496.9
Cco01g1794 . 875 1295 FH2 protein (formin) Gene Family AT3G32400 58.1 1.1e-131 467.2
Cco05g1867 . 1 1403 FH2 protein (formin) Gene Family AT2G25050 51.1 0.0e+00 1156.4
Cco06g1422 . 1 1256 FH2 protein (formin) Gene Family AT2G25050 50.6 1.0e-294 1010.0
Cco06g1795 . 19 442 FH2 protein (formin) Gene Family AT2G25050 60.4 5.4e-142 502.7
Cco06g1795 . 49 442 FH2 protein (formin) Gene Family AT5G07780 63.0 1.7e-123 439.9
Cco01g1794 . 906 1295 FH2 protein (formin) Gene Family AT5G07780 57.9 3.6e-113 405.6
Cco05g1867 . 1006 1396 FH2 protein (formin) Gene Family AT5G07780 54.3 2.0e-103 373.2
Cco06g1422 . 866 1255 FH2 protein (formin) Gene Family AT5G07780 53.8 1.1e-101 367.5
Cco07g0234 . 873 1262 FH2 protein (formin) Gene Family AT5G07780 52.0 1.1e-101 367.5
Cco06g1795 . 5 451 FH2 protein (formin) Gene Family AT5G07740 79.1 2.6e-187 653.7
Cco06g1795 . 120 449 FH2 protein (formin) Gene Family AT5G07760 74.4 3.3e-128 456.4
Cco01g1794 . 981 1295 FH2 protein (formin) Gene Family AT5G07760 69.3 4.4e-117 419.5
Cco06g1422 . 935 1255 FH2 protein (formin) Gene Family AT5G07760 64.7 3.1e-110 396.7
Cco05g1867 . 1080 1412 FH2 protein (formin) Gene Family AT5G07760 64.0 9.0e-110 395.2
Cco07g0234 . 946 1267 FH2 protein (formin) Gene Family AT5G07760 60.1 5.1e-105 379.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001056 4 3 4 4 4 2 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 3 2 2 3 3 2 81