Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1697 ATGCCAACAGTTTGGTTTTCTCTGAAAAAGTCCTTCCCTTGCAAGCCAGAGCCATCAGAAGTCTATGATCCAAAGTGCAGGAAACAACTCAACACAATCACAACTAAGAAAGCATCCAGAAAGTCAGGTTGTTCTTCTGGAAGGTCTGGTTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATCCATGGAAGCAAGAGGCACATGGAAAAACCACCGATTTGCAGCCCGAGGTCGATCGGTAGCAGCGAGTTCCTCAACCCAATTGCTCATGAAGTCATACTGAGCAACTCAAAGTGTGAGCTCAAGATCACTGGTTTTGGAAGCTTCCACCAAGAGGGTGTAGGAAATGCTAGCTTTGGAGGGGGCGCAGGTGGGAATTCGCCATTTTCCGGTACACTAAGACCCGGAACTCCTGGTCCGGGGGAGCACTTTGTTAACAACTCCAGTTCTCCTTTTAGTACTACCTCCATATCTGCTGCAAGAAAGCTTCCTTCTCTTAGAGATGGGCCTGCGGCTGGGAGTACTGCTAAATCTAAGGTGGGTGGGGAAATTCATACAAGCAAAAGGTTCTCCCCGCTAACCGAACTAAACGGTAATGCATTTTCGACGGTTACTTGCCATAAATGTGGAGAGCAGTTTTGCAAATTGGAGGCTGCTGAGTCTCACCATCTCTCTAAGCATGCTGTTACCGAGCTTGTGGAAGGTGATTCATCGAGGAAAATTGTCGAAATAATATGTCGAACGAACTTGTTGAAATCAGAGAACAATGGCAACCGTATCGAACGAGTCTTCAAAGTTCACAATATGCAAAAAACGTTAGCTGGATTTGAAGAATACAGGGAAATGGTGAAGATCAAGGCAAGCAAGCTTTCGAAGAAACACCCTCGATGCCTTGCGGATGGGAACGAGCTGCTGAGGTTTTACGGGACTACTTTAGGCTGCTCTCTTGGACTAAATGGCTCCTCCAGCCTCTGCATATCACAGAAATGCAATGTCTGCAGAATTATAAGGAATGGTTTCTCAGCAAAGAAGGATATGAAAGAAGAAGTAGGAGTTTTCACGACTTCGACGAGCGGAAAAGCTTTCGAAACCATTGAAACGACAGAAGAAAGCTCAGTAAAGAAAGCATTGATAATCTGCAGAGTGATTGCAGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGATATGGTTGGCCAAACAGGGTTTGATTCTCTAGCTGGCAAAGTGGGATTACATTCCAACATTGAAGAGCTTTATTTGCTCAGTCCTAGAGCTTTGCTTCCCTGTTTTATTGTAATTGCAAGCCATGAAAGATAG 1323 44.97 MPTVWFSLKKSFPCKPEPSEVYDPKCRKQLNTITTKKASRKSGCSSGRSGCSRSIANLKDVIHGSKRHMEKPPICSPRSIGSSEFLNPIAHEVILSNSKCELKITGFGSFHQEGVGNASFGGGAGGNSPFSGTLRPGTPGPGEHFVNNSSSPFSTTSISAARKLPSLRDGPAAGSTAKSKVGGEIHTSKRFSPLTELNGNAFSTVTCHKCGEQFCKLEAAESHHLSKHAVTELVEGDSSRKIVEIICRTNLLKSENNGNRIERVFKVHNMQKTLAGFEEYREMVKIKASKLSKKHPRCLADGNELLRFYGTTLGCSLGLNGSSSLCISQKCNVCRIIRNGFSAKKDMKEEVGVFTTSTSGKAFETIETTEESSVKKALIICRVIAGRVHRPLENIQDMVGQTGFDSLAGKVGLHSNIEELYLLSPRALLPCFIVIASHER 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24934045 24935672 + CcPI632755_05g016970.1 Cco05g1697 179325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1697 440 SUPERFAMILY ADP-ribosylation 230 437 - -
Cco05g1697 440 MobiDBLite consensus disorder prediction 120 184 - -
Cco05g1697 440 MobiDBLite consensus disorder prediction 143 162 - -
Cco05g1697 440 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 435 - -
Cco05g1697 440 Gene3D - 231 427 - -
Cco05g1697 440 FunFam C2H2-like zinc finger protein 229 437 - -
Cco05g1697 440 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1697 Cco-Chr5:24934045 Cco05g2076 Cco-Chr5:29744977 1.70E-48 dispersed
Cco04g2020 Cco-Chr4:34277741 Cco05g1697 Cco-Chr5:24934045 2.90E-67 transposed
Cco10g0588 Cco-Chr10:7785120 Cco05g1697 Cco-Chr5:24934045 1.10E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1697 - - - 0.0