Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1706 ATGCAGCAAGAGGCCCATATGAGACAGCTTCAAGGGCCTCATTTTCGTGCCCTACTACGGGAAATACTAGAAAGCCAAATTTGCCCAATAAAAGAATGCAATCCTTTTTACCAAAATCCAGGATATGTCGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACCGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCTACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCAAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGAACTGCAGAACTCTTGA 666 48.8 MQQEAHMRQLQGPHFRALLREILESQICPIKECNPFYQNPGYVGFSSLNPKAMALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKPEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNELQNS 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25097498 25100333 - CcPI632755_05g017060.1 Cco05g1706 179334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1706 221 PANTHER NUCLEOLAR PROTEIN 8 127 209 - GO:0003723(PANTHER)|GO:0005739(PANTHER)|GO:0080156(PANTHER)
Cco05g1706 221 Gene3D - 118 221 IPR012677 -
Cco05g1706 221 Pfam RNA recognition motif 133 199 IPR000504 GO:0003723(InterPro)
Cco05g1706 221 SUPERFAMILY RNA-binding domain, RBD 113 214 IPR035979 GO:0003676(InterPro)
Cco05g1706 221 SMART rrm1_1 132 205 IPR000504 GO:0003723(InterPro)
Cco05g1706 221 FunFam RNA recognition motif-containing protein 110 221 - -
Cco05g1706 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1706 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1036 Cco-Chr4:25908897 Cco05g1706 Cco-Chr5:25097498 2.40E-23 dispersed
Cco05g1706 Cco-Chr5:25097498 Cco10g1863 Cco-Chr10:32241265 1.50E-13 dispersed
Cco05g1706 Cco-Chr5:25097498 Cco06g1759 Cco-Chr6:28069321 2.60E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g394 . . . Bda09g00380 . Bpe08g01145 . . . . Cma01g01162 Cma09g00914 . Car09g00831 Sed14g0466 Cpe06g00736 Cpe02g00740 Bhi09g01960 Tan01g4493 Cmetu08g1286 . Hepe01g1323 Mch11g1137 . . . . . . . . . . . Cone15ag1130 Lsi04g01255 . Chy04g01029 . . . . . . . Bma07g01319 Bma14g00366 . Cmo01g01216 Cmo09g00908 . . . Car16g00574 . . . . . . . . . Cla05g01553 Cam05g1661 Cec05g1666 Cco05g1706 Clacu05g1655 Cmu05g1549 Cre05g1661 . . . Cme04g00784
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005243 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 40