Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1723 ATGCTCAAAAAGACAAAAATGGCAAATGCTTCACTAACTCTGTTTCTGTCTCTGTCTCTGTTTCTCTTCTCTTCACCGTCTGTGGCTGTTGATTTCATAATTTCCTCACAAAACCTCACCCATGGCGCCACTCTTATCTCCGCAAAAAAAATTTTTGAACTGGGTTTCTTCAGCCCAGGAAATTCCACCAACCGTTACTTGGGCATTTGGTACAAAATCATCCCAGTTCGTACAATCGTTTGGGTCGCCAACAGAGAAAACCCCATCACTAATTCTTCCGCTGCTGTCGTTCTCAAAATCAACACCACCACCAGCGATCTCCTCCTTTTTGAGAACGACGCCGTTGTTTGGGTTGGAAAATCGTTGAAACCAGTAAAAACCCCCAAACTACACCTCTTAGACAATGGAAATCTGGTGTTGAAAGACGCTGAATCAGAGAAAATTTCATGGCAAAGCTTCGATTACCCAACGGATACATTACTTCCCGGAATGAAACTCGGATGGGACTTCGAAAATAGAATCCAACGCCGATTATCCGCTTGGAAATCCTCCGATGACCCATCTCCAGGGAGTTTAACGATGGAAATGATGAACACAAACTACCCAGAACCAGCGATGTGGAATGGGTCGAAAGAGTTCATGAGAAGCGGACCATGGAACGGCCTTCAATTCAGCGCAAAACCCACATCGGCTTTACCGATTTTAGTGTACAGCTATGTAAACAACAAATCCGAGCTCACTTACAGCTACGAGCTCATAAACTCTTCGTTAATTGGAAGAATGGTGTTGAATCAAACGCTATTCAGAAGAGAAGCTTTGTTATGGTCTGCATCGGAGAATATTTGGAAGCTGTATGCGACTATGCCGAGGGATTACTGCGATACTTACGGACTTTGTGGTGCGTTTGGGAGCTGTGACATTGAGCAAGTGCCTGCTTGTCAATGTCTAAGAGGGTTTCATCCTAAAGTACAAGAGAAATGGAATTTGATGGATTATACTGAAGGGTGTGTGAGGAATAAGGCTTTGAATTGTTCTGATAAAACTGGGTTTGCAAAGCTTCCGGGGTTGAAATTGCCTGATACAAAGCAGTCTTGGGTTAATGAAAGTATGGGTTTGAATGAATGTAGAGATAAGTGTTTGAGGAATTGTTCTTGTGTGGCGTTTGCTAATACTGATATTAGAGGATCAGGGAGTGGTTGTGCTATTTGGTTTGGGGATCTTGTTGATATCAAAGTTGTTCGAAAAGGAGGCCAGGATTTGTATGTTAGAATGTTGGCTTCTGAATTGGAGACAAAGAAGACGAGTTCCGTTGTCGTCGGCGTTATCGTCGGAGTGGCGATTCTGGTGATTGCTGGTCTGGCTTTGATTGGGTTTTACCTTATTAGAAGCAGGAGGAGAAGTCTCGAAGGTGTAGGCAAGGATCTGGAAGGGCAAGAAGAAGATTTGGAGCTCCCATTAGTCGACTTAACAACAATATCTAATGCCACAGACAATTTTTCGAACTCCAACAAGCTTGGAGAAGGTGGTTTTGGTGCAGTCTTTTGGGGTAGACTTGGAGATGGACAAGAAATTGCAGTTAAAAGACTTTCTAGCTATTCAAGACAAGGGACTGATGAATTCAAGAATGAAGTGATACTCATTGCCAAACTTCAACATAGAAATCTTGTAAAACTTTTGGGTTGTTGCATACAAGGAGAGGAAAAGATGTTGATTTATGAGTACATGCCTAATAAGAGTTTGGACTCCTTCATTTTTGATCCTGCTAGAAAGAAGCTTTTGGATTGGTCGAAAAGATTCAATATCATATGCGGAATAGCTCGAGGGATTCTTTACCTTCATCAAGATTCGAGATTGAGGATTATACATAGAGATTTAAAAGCAAGCAATGTATTGCTTGATATTGACATGAATCCAAAAATCTCGGATTTTGGAATGGCTAGAACGTTTGGAGGGGACCAAACCGAAGGAAATACTAGGAGAGTGGTCGGAACATATGGGTATATGGCACCAGAGTACGCCATTGATGGGCAATTTTCCATCAAGTCAGACGTCTTTAGTTTTGGAATATTATTGTTGGAAATTATAAGTGGAGAGAAGAATAGAGGGTTTTTTCGTCCTAACCATGCTCTGAACCTGATTGGACATGCATGGAAGTTATGGAATGAAGGGAAGCCATTAGAGTTGATTGATGCAACCATTGGAGAATCTTATGCTCTATCTGAAGTGTTGAGATGCATTCATGTTAGCCTCTTGTGCTTGCAACAACTTCCCGAAGATAGACCAACCATGTCAAATGTAGTTCTAATGCTAAGTAGTGAGAGCTCATTGCCACAACCAAAACAACCAGGATTTTACATGGAAAGAGATTCTCTTGAAGCATTTTCTCTTGATGGCAAGAATGAATCTTCTACTACCAATGAATTAACTATTACCCTCTTGGAGGCTAGATAA 2451 41.62 MLKKTKMANASLTLFLSLSLFLFSSPSVAVDFIISSQNLTHGATLISAKKIFELGFFSPGNSTNRYLGIWYKIIPVRTIVWVANRENPITNSSAAVVLKINTTTSDLLLFENDAVVWVGKSLKPVKTPKLHLLDNGNLVLKDAESEKISWQSFDYPTDTLLPGMKLGWDFENRIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELTYSYELINSSLIGRMVLNQTLFRREALLWSASENIWKLYATMPRDYCDTYGLCGAFGSCDIEQVPACQCLRGFHPKVQEKWNLMDYTEGCVRNKALNCSDKTGFAKLPGLKLPDTKQSWVNESMGLNECRDKCLRNCSCVAFANTDIRGSGSGCAIWFGDLVDIKVVRKGGQDLYVRMLASELETKKTSSVVVGVIVGVAILVIAGLALIGFYLIRSRRRSLEGVGKDLEGQEEDLELPLVDLTTISNATDNFSNSNKLGEGGFGAVFWGRLGDGQEIAVKRLSSYSRQGTDEFKNEVILIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDSFIFDPARKKLLDWSKRFNIICGIARGILYLHQDSRLRIIHRDLKASNVLLDIDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSIKSDVFSFGILLLEIISGEKNRGFFRPNHALNLIGHAWKLWNEGKPLELIDATIGESYALSEVLRCIHVSLLCLQQLPEDRPTMSNVVLMLSSESSLPQPKQPGFYMERDSLEAFSLDGKNESSTTNELTITLLEAR 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25503525 25507757 - CcPI632755_05g017230.1 Cco05g1723 179351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1723 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 574 - -
Cco05g1723 816 CDD PAN_AP_plant 342 423 - -
Cco05g1723 816 Gene3D Transferase(Phosphotransferase) domain 1 575 781 - -
Cco05g1723 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 778 - -
Cco05g1723 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
Cco05g1723 816 Pfam PAN-like domain 344 410 IPR003609 -
Cco05g1723 816 SUPERFAMILY Protein kinase-like (PK-like) 484 770 IPR011009 -
Cco05g1723 816 SMART serkin_6 499 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1723 816 SMART ntp_6 345 424 IPR003609 -
Cco05g1723 816 Pfam Protein tyrosine and serine/threonine kinase 502 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1723 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1723 816 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1723 816 PIRSF SRK 3 816 IPR024171 GO:0004674(InterPro)
Cco05g1723 816 ProSiteProfiles Bulb-type lectin domain profile. 30 153 IPR001480 -
Cco05g1723 816 Pfam D-mannose binding lectin 78 182 IPR001480 -
Cco05g1723 816 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524(InterPro)
Cco05g1723 816 Gene3D - 27 153 IPR036426 -
Cco05g1723 816 Gene3D Phosphorylase Kinase; domain 1 470 574 - -
Cco05g1723 816 Pfam Domain of unknown function (DUF3403) 771 816 IPR021820 GO:0004674(InterPro)
Cco05g1723 816 SMART blect_4 36 156 IPR001480 -
Cco05g1723 816 CDD STKc_IRAK 505 770 - -
Cco05g1723 816 Pfam S-locus glycoprotein domain 215 322 IPR000858 GO:0048544(InterPro)
Cco05g1723 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 343 424 - -
Cco05g1723 816 Gene3D Hepatocyte Growth Factor 340 426 - -
Cco05g1723 816 ProSiteProfiles PAN/Apple domain profile. 344 425 IPR003609 -
Cco05g1723 816 CDD B_lectin 39 156 IPR001480 -
Cco05g1723 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 30 784 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0150 Cco-Chr2:1545803 Cco05g1723 Cco-Chr5:25503525 3.20E-141 dispersed
Cco03g0536 Cco-Chr3:5504421 Cco05g1723 Cco-Chr5:25503525 2.00E-191 dispersed
Cco03g0539 Cco-Chr3:5531224 Cco05g1723 Cco-Chr5:25503525 2.20E-197 dispersed
Cco04g2026 Cco-Chr4:34328358 Cco05g1723 Cco-Chr5:25503525 1.80E-179 dispersed
Cco05g1723 Cco-Chr5:25503525 Cco10g0590 Cco-Chr10:7796754 1.50E-271 dispersed
Cco09g0250 Cco-Chr9:2272294 Cco05g1723 Cco-Chr5:25503525 5.00E-110 transposed
Cco03g0535 Cco-Chr3:5490912 Cco05g1723 Cco-Chr5:25503525 1.80E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86852 PF07714 PK_Tyr_Ser-Thr 2.30E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1723 - - - 0.0