Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1735 ATGGCGGACTACGGCGGCCACAATCTGGAAGTGGATCCAAGAAGCGGCTTCTGCAAATCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCTAACCAATCCCTCGATGCGACGACCTTTATCTCTTCCCGCCCTCACAACGGCAAAATCGCCCTCATCGACGCCACCACCGGCCAACAAGTCACCTATTCCCACCTCTGGAACTCCGTCGACGCCGTAGCCTCTTCCCTTTCCGACATGGGCATCCGAAAAGGCCACGTCATCCTCCTCCTTTCCCCTAACTCCATTTACTTTCCCATTATTTGCCTCGCCGTCATGTCCATCGGCGCCGTCATCACCACCACAAATCCCCTCAACACCCCTCAAGAAATCGCCAAACAAATCGCCGATTCCAAACCCATTTTAGCCTTCACTACCCAACAACTAATCCCCAAAATCGCCGCTTCCAAATTGCCAATCGTCATAATCGACGGTCAAGTTCCAAAATCCCCAGTCAAAATCGTGTCGACATTGAGCGAAATGATGAGGGAAAAACCAAGTGAGAGTCGAATTAAGGAACGCGTGGAGCAAAACGACACAGCGACTCTGCTTTATTCATCTGGAACGACAGGGGCGAGCAAAGGCGTAGTGTCGTCTCACAAGAATTTAATTGCAATGGTTCAAGTGGTTGTGACGAGGTTCAAATTAAGCGAAGGGGAAGGGACTTTTATTTGTACGGTCCCAATGTTTCATATTTACGGCCTTGTGGCTTTCGCTACTGGGTTGCTCTCTTCGGGATCTACAATCGTTGTATTATCGAAATTTGAGATTCATGAAATGTTGTCGGCGATTGACAAGTACAAGGCCACGTATCTGCCTCTTGTGCCGCCGATTCTGGTGGCGCTCGTGAACGCCGCCGACCAGATAAAGGGCAAGTACGATTTGGGGTCGTTGCACACGGCGTTGTCCGGCGGAGCGCCGCTTGGGAAGGAGGTGATTGAGGGTTTTGTTGAGAAATATCCGAATGTCGCAATTCTTCAGGGTTATGGATTGACGGAATCCACCGGAATTGGGGCGTCCACCGATTCGCTGGAGGAGAGCCGCCGATACGGCACGGCGGGGCTTCTGTCACCGAGCACTGAGGGCATGATTGTTGACCCGGAAACCGGCGAGGCTCTTCCCGTGAACCGGACCGGAGAACTTTGGCTTAGAGGGCCCACCGTAATGAAAGGGTACTTTGGTAACACGGAGGCCACAACCTCAACACTTGATTCAGAGGGATGGTTGAGAACCGGTGATCTGTGTTATATCGATGAAGATGGTTTTATTTTTGTAGTTGATAGGCTGAAGGAACTAATCAAATATAAGGGATACCAGGTGCCTCCTGCTGAATTAGAGGCGTTGTTGCTTACTCATCCCAGTATCTCCGATGCAGCTGTGATTCCATATCCAGACAAAGAGGTTGGACAGTATCCGATGGCTTATGTGGTAAGGAAGGGTGGAAGCGACATTTCACATGAAGATGTAATGCAATTTGTGGCAAAACAGGTGGCGCCGTACAAAAGAATCCGGCGGGTGGCGTTCGTGGGTTCCATTCCCAAGAATCCGTCCGGCAAGATTCTTAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTGTGA 1653 50.7 MADYGGHNLEVDPRSGFCKSTKIFHSKRRPIPLPPNQSLDATTFISSRPHNGKIALIDATTGQQVTYSHLWNSVDAVASSLSDMGIRKGHVILLLSPNSIYFPIICLAVMSIGAVITTTNPLNTPQEIAKQIADSKPILAFTTQQLIPKIAASKLPIVIIDGQVPKSPVKIVSTLSEMMREKPSESRIKERVEQNDTATLLYSSGTTGASKGVVSSHKNLIAMVQVVVTRFKLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIDKYKATYLPLVPPILVALVNAADQIKGKYDLGSLHTALSGGAPLGKEVIEGFVEKYPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIVDPETGEALPVNRTGELWLRGPTVMKGYFGNTEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPSISDAAVIPYPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVGSIPKNPSGKILRKDLIKLATSKL 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25701367 25706877 + CcPI632755_05g017350.1 Cco05g1735 179363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1735 550 Gene3D - 21 447 IPR042099 -
Cco05g1735 550 Pfam AMP-binding enzyme 50 410 IPR000873 -
Cco05g1735 550 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Cco05g1735 550 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cco05g1735 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 25 447 - -
Cco05g1735 550 SUPERFAMILY Acetyl-CoA synthetase-like 44 548 - -
Cco05g1735 550 CDD 4CL 33 542 - -
Cco05g1735 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 542 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
Cco05g1735 550 Gene3D - 448 549 IPR045851 -
Cco05g1735 550 FunFam 4-coumarate--CoA ligase 2 448 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1735 Cco-Chr5:25701367 Cco10g1266 Cco-Chr10:25399980 1.30E-101 dispersed
Cco03g0290 Cco-Chr3:3148328 Cco05g1735 Cco-Chr5:25701367 8.10E-125 transposed
Cco03g0362 Cco-Chr3:3930565 Cco05g1735 Cco-Chr5:25701367 6.70E-135 transposed
Cco05g2400 Cco-Chr5:32479547 Cco05g1735 Cco-Chr5:25701367 2.60E-126 transposed
Cco07g0222 Cco-Chr7:2229190 Cco05g1735 Cco-Chr5:25701367 2.50E-124 transposed
Cco10g1993 Cco-Chr10:33441764 Cco05g1735 Cco-Chr5:25701367 5.10E-119 transposed
Cco11g1407 Cco-Chr11:26838992 Cco05g1735 Cco-Chr5:25701367 7.70E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1735 K10526 - csv:101221396 1009.98