Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1748 ATGGAAGAACCGCCAACTGAAACTACAAGGTCACCGCCACAACCGTTGATCGAAGAACCCGACCCAAAGAAGCTTAAAATGTCATCCACAACCACCACCTCCGACGACGATGTCAATTCCAATTCTGGGGCGCCAAAGAAACAAAGATACAAGCGCCGCAAGATCGCCATTTTCTTTGCCTACTGTGGCGTCGGTTACCAAGGGATGCAGAAGAATCCGGGCGCTAAAACCATTGAAGCTGACCTTGAAGAAGCCCTATATCTCGCTGGAGCAGTCCCGGAGCAGGACCGAGGGCTCTCCAAGCGCTACGATTGGGCCCGCTCGGCTCGCACTGATAAGGGCGTGAGTGCCGTGGGTCAGGTTGTTTCCGGTCGCTTCTACATCGATCCGCCAGGTTTTGTTGATCGTCTCAATTCAAATCTTTCGCCTCAGATTCGAATTTTCGGGTACAAGCGCGTCACAGCGTCATTCAATGCGAAAAAGTTCTGCGATCGGAGAAGGTATGTATACCTAATTCCTGTATTCGCTCTCGATCCCAATTGTCATCGTGATAGAGAAAGTGTGAAGGCTAGTTTAGGGTCTGACAACGAGCTTGTGAAGTGCTTAGAGTGCTCTGAACGAGGACGCAAGGTCGAAGGCTTGATGGGCAAGCGCAATTTTGAAGTAAAAACTTCAATAACTGACTCAGACATTTCTTCGAACACTGGAAACGCCATTGAAGTTTCTGATGTTCAGGAAAATAGGGTTTTGGAGGACAATGATACGACCTCTGATTCTAACAAACAAACTAGCGTTTTGGTTGAAAATAGTTGTACTGAACTCAATGTTGGAAGCGAAGGTACTGCAAAAAGTGTAGGCACTGAAATGTCTGGATTAGGGAATGATTCAGAGATTGTTGTAAGCAAAGAGAGCGTTAATGGGAACGAAAAACCCTCACGGAGCTTCAAGTATGGCGAGGAGGAGAAGGCTAGATTCAATAGGATTTTGAAGAATTATGTGGGAACTCATAACTTCCATAATTTTACAACCAGAACAAAAGCAGAGGACCCTGCTGCTCGTCGGTTCATTGTTTCATTTGATGCGTCTACCACTGTCGTGGTTGAAGGCATCGAATTTGTGAAATGTGAAGTTGTGGGGCAGAGCTTCATGCTTCATCAGATCCGAAAGATGATGGGTCTTGCTGTGGCAATCATGAGGAACTGTGCTCCAGAGTCATTGATTGAGAAGGCTTTGCAAAAGGATGTAAATATCAATGTGCCCACTGCACCTGAGGTTGGGCTGTACTTAGATGAGTGCCTATTCACATCATATAATCAAAAGTGGAAAGACAGTCATGAAGAGGTATCTATGAAAGCATACGAAGAGGTAGCACAAGATTTCAAAATGAAGCAAATATATTCACACATAGCTTCCACAGAGCACAAAGATGGAGCCGTGGCCTTATGGTTGCATTCTCTAAACCATCGGAATTATCCAGATTTACGGGTTGTTGATGAGGTTGCAGAAATTGCTAAGAACACAAGTGTTGCCATGGAGACACAAGGCTGA 1548 45.61 MEEPPTETTRSPPQPLIEEPDPKKLKMSSTTTTSDDDVNSNSGAPKKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLECSERGRKVEGLMGKRNFEVKTSITDSDISSNTGNAIEVSDVQENRVLEDNDTTSDSNKQTSVLVENSCTELNVGSEGTAKSVGTEMSGLGNDSEIVVSKESVNGNEKPSRSFKYGEEEKARFNRILKNYVGTHNFHNFTTRTKAEDPAARRFIVSFDASTTVVVEGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYLDECLFTSYNQKWKDSHEEVSMKAYEEVAQDFKMKQIYSHIASTEHKDGAVALWLHSLNHRNYPDLRVVDEVAEIAKNTSVAMETQG 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25867470 25869111 + CcPI632755_05g017480.1 Cco05g1748 179376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1748 515 CDD PseudoU_synth_PUS1_PUS2 57 434 IPR041708 GO:0009982(InterPro)|GO:0031119(InterPro)
Cco05g1748 515 SUPERFAMILY Pseudouridine synthase 51 444 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cco05g1748 515 FunFam tRNA pseudouridine synthase 296 496 - -
Cco05g1748 515 FunFam tRNA pseudouridine synthase 44 163 - -
Cco05g1748 515 MobiDBLite consensus disorder prediction 1 48 - -
Cco05g1748 515 Pfam tRNA pseudouridine synthase 329 434 IPR020097 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Cco05g1748 515 MobiDBLite consensus disorder prediction 26 45 - -
Cco05g1748 515 PANTHER PSEUDOURIDYLATE SYNTHASE 38 495 IPR001406 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0009451(InterPro)|GO:0009982(InterPro)|GO:0009982(PANTHER)|GO:0031119(PANTHER)|GO:1990481(PANTHER)
Cco05g1748 515 Gene3D - 44 163 IPR020094 GO:0003723(InterPro)|GO:0009982(InterPro)
Cco05g1748 515 Gene3D - 297 498 IPR020095 GO:0003723(InterPro)|GO:0009982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1748 K06173 - - csv:101219581 939.488
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0024 Cco-Chr3:269281 Cco05g1748 Cco-Chr5:25867470 5.90E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g144 . Blo12g00869 . Bda03g00305 . Bpe04g00267 Bma04g00269 . . . . Cma09g00077 . . . Cpe06g00041 . . . . . . . . . . . . . . . . Cone7ag1918 . . Lsi04g01786 Csa04g02676 . . . . . . . . . . Sed01g2458 . Cmo09g00076 . . . Car09g00067 . . Bhi09g02939 Tan01g5065 Cmetu07g1422 . Hepe01g2313 Mch11g0079 . Cla05g01587 Cam05g1696 Cec05g1697 Cco05g1748 Clacu05g1683 Cmu05g1573 Cre05g1690 . . . Cme07g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008390 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 35