Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1750 ATGTCACCGCCGGCCAGGACCAAAAGCTGGAACGGCGGCCTCGATAAACACTATCCTCCACCGCTCACCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGAGGACATGAAAAGGTTGTTGTAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAATTGGGATCTGAGGTTCTAAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCCTCGGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAACCACCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGGGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCGATGTTGATGGAGCTAACTATTCAAAACATGGGGAGTAG 975 45.95 MSPPARTKSWNGGLDKHYPPPLTTHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVVEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATDVDGANYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25891472 25893074 + CcPI632755_05g017500.1 Cco05g1750 179378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1750 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Cco05g1750 324 MobiDBLite consensus disorder prediction 196 244 - -
Cco05g1750 324 SUPERFAMILY ARID-like 25 128 IPR036431 GO:0003677(InterPro)
Cco05g1750 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Cco05g1750 324 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677(InterPro)
Cco05g1750 324 Coils Coil 294 314 - -
Cco05g1750 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Cco05g1750 324 Gene3D High mobility group box domain 222 318 IPR036910 -
Cco05g1750 324 Gene3D - 25 126 IPR036431 GO:0003677(InterPro)
Cco05g1750 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Cco05g1750 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 316 - -
Cco05g1750 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Cco05g1750 324 SMART ARID_2 26 116 - -
Cco05g1750 324 SMART hmgende2 237 306 IPR009071 -
Cco05g1750 324 MobiDBLite consensus disorder prediction 219 235 - -
Cco05g1750 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Cco05g1750 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1750 Cco-Chr5:25891472 Cco06g0804 Cco-Chr6:9430549 8.60E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59319 PF01388 ARID 8.40E-18 CL0123 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1750 - - - 0.0