Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1750 | ATGTCACCGCCGGCCAGGACCAAAAGCTGGAACGGCGGCCTCGATAAACACTATCCTCCACCGCTCACCACCCACGATGAAGTTATTTCCGACCCCATTGTTTTTTGGGACACGTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATTCAGAAGTCACAAGAAGAGGAGGACATGAAAAGGTTGTTGTAGAGAAGAAATGGAGAGAAGTTGGAAGTGTGTTTAAGTTTTCTCCTACAACAACGAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTCGGCCGGCAGGGCCCCATCTGTGTCCCTCAAGCGCCATTTTCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTTGTGGAATATACCCCCAAAACTACGTCGTTTTCGCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAATTGGGATCTGAGGTTCTAAGAGGAGTTCTTTACCATCCAGAGCAGCCACCTCCCTCGGATCTCCGGCCTCAGTCTACCAATGCCATTGTACCGTATACCGGCGGCAGACATCGATATTCTGGTAGGCGGCACCGGAGGAGCCGGAGAAAGGGAGATCCGAACCACCCAAAACCAAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGGGAAAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAATCTTAGCCCTGAAGAAAGGATGGTTTATCAAAACATTGGGTTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTATAAGGAGAAAATGAGGCAGGCAACCGATGTTGATGGAGCTAACTATTCAAAACATGGGGAGTAG | 975 | 45.95 | MSPPARTKSWNGGLDKHYPPPLTTHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVVEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRHRYSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRELKEYKEKMRQATDVDGANYSKHGE | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 25891472 | 25893074 | + | CcPI632755_05g017500.1 | Cco05g1750 | 179378 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1750 | 324 | CDD | ARID_HMGB9-like | 31 | 116 | IPR045303 | GO:0003677(InterPro) | |
Cco05g1750 | 324 | MobiDBLite | consensus disorder prediction | 196 | 244 | - | - | |
Cco05g1750 | 324 | SUPERFAMILY | ARID-like | 25 | 128 | IPR036431 | GO:0003677(InterPro) | |
Cco05g1750 | 324 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 238 | 305 | IPR009071 | - | |
Cco05g1750 | 324 | Pfam | ARID/BRIGHT DNA binding domain | 35 | 116 | IPR001606 | GO:0003677(InterPro) | |
Cco05g1750 | 324 | Coils | Coil | 294 | 314 | - | - | |
Cco05g1750 | 324 | Pfam | HMG (high mobility group) box | 238 | 305 | IPR009071 | - | |
Cco05g1750 | 324 | Gene3D | High mobility group box domain | 222 | 318 | IPR036910 | - | |
Cco05g1750 | 324 | Gene3D | - | 25 | 126 | IPR036431 | GO:0003677(InterPro) | |
Cco05g1750 | 324 | CDD | HMG-box_AtHMGB9-like | 238 | 304 | - | - | |
Cco05g1750 | 324 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 16 | 316 | - | - | |
Cco05g1750 | 324 | SMART | bright_3 | 30 | 121 | IPR001606 | GO:0003677(InterPro) | |
Cco05g1750 | 324 | SMART | ARID_2 | 26 | 116 | - | - | |
Cco05g1750 | 324 | SMART | hmgende2 | 237 | 306 | IPR009071 | - | |
Cco05g1750 | 324 | MobiDBLite | consensus disorder prediction | 219 | 235 | - | - | |
Cco05g1750 | 324 | SUPERFAMILY | HMG-box | 235 | 309 | IPR036910 | - | |
Cco05g1750 | 324 | ProSiteProfiles | ARID domain profile. | 29 | 120 | IPR001606 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1750 | Cco-Chr5:25891472 | Cco06g0804 | Cco-Chr6:9430549 | 8.60E-74 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59319 | PF01388 | ARID | 8.40E-18 | CL0123 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1750 | - | - | - | 0.0 |